Priesemann-Group / covid19_inference

Bayesian python toolbox for inference and forecast of the spread of the Coronavirus
GNU General Public License v3.0
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Testing data class #28

Closed joaopn closed 4 years ago

joaopn commented 4 years ago

There is (now?) a very cool dataset on testing around the world: https://github.com/owid/covid-19-data/tree/master/public/data/testing It is the data behind this other cool website on testing information: https://ourworldindata.org/covid-testing

Since one of the aims in the future is to find ways to incorporate sampling corrections, a data_retrieval.testing() class would be useful.

This is a bit scrappier than usual because some data sources are daily, others weekly (e.g. Germany), and others in irregular intervals. There are also at least 4 types of testing data:

Probably what makes sense is to manually select which countries to ingest data, as building something robust enough for all would be difficult. Helper functions to add this data to other dataframes (e.g. JHU) would also be nice. Thoughts?