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Project-MONAI / MONAI

AI Toolkit for Healthcare Imaging
https://monai.io/
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Unification of auto3dseg algorithm template format and MONAI bundle format #7467

Open mea02jct opened 8 months ago

mea02jct commented 8 months ago

Following on from this discussion https://github.com/Project-MONAI/MONAILabel/discussions/1630...

Currently, trained auto3dseg models have their own algorithm bundle format, which is different to that of a 'conventional' MONAI bundle as found in the model zoo.

Having two types of 'bundle' is confusing and the documentation isn't very clear on this. At the macro level it does also make me wonder which format will MONAI be using in the longer term. Like a lot of other people I'm keen to standardise my trained models.

It would be great if the two 'bundle' types could be unified, or at least provide a clear differentiation between the two

Thanks

KumoLiu commented 8 months ago

Hi @mea02jct, thanks for your interest here. The algorithms in auto3dseg are not in MONAI bundle format yet, we have plans to enhance them to adapt to the bundle format but have not gotten time yet.

You can find the details of how to MONAI Bundle is defined here. https://docs.monai.io/en/latest/mb_specification.html#monai-bundle-specification Hope it helps, thanks.