Project-MONAI / MONAILabel

MONAI Label is an intelligent open source image labeling and learning tool.
https://docs.monai.io/projects/label
Apache License 2.0
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Mask not loading properly with MONAILabelReviewer slicer plugin #1648

Closed bkonkva closed 3 months ago

bkonkva commented 3 months ago

I've installed the MONAILabelReview plugin for slicer in linux. I'm using a recent monai version (0.8.1) w/ the slicer 5.7.0 nightly build (i tried w/ 5.6.1 stable as well).

I have the monailabel server running. I can hit the http://0.0.0.0:8080 server from slicer via the reviewer plugin and the first image loads. However the corresponding mask does not load. I can see the folder w/ the labels under "Version of labels" in Slicer - which I believe means that it is able to recognize that the correct mask exists. I'm also able to load that mask manually and have it appear correctly.

image data is in: data/images/####_0000.nii.gz labels in: data/images/labels/original/####_0000.nii.gz

server started w/: monailabel start_server --port 8080 --app /apps/radiology --studies /data/images --conf models segmentation

Could use some suggestions for troubleshooting.