Open antoniaaaaaaaa opened 6 months ago
lassoan
commented
6 months ago Probably the issue is that too many people are trying to access the https://raw.githubusercontent.com/Project-MONAI/model-zoo/dev/models/model_info.json file. Requiring users to create and specify github tokens would be very inconvenient. It would be better to put the file into a github release asset and then there would be no rate limit issues.
tangy5
commented
6 months ago Latest monailabel, pip install monailabel==0.8.2rc3 should have fixed this issue. You can try the upgrade, let me know if the issue still exists. :)
antoniaaaaaaaa
commented
6 months ago 最新的 monailabel，pip install monailabel==0.8.2rc3 应该已经解决了这个问题。您可以尝试升级，如果问题仍然存在，请告诉我。 :)
(monailabel) huyao@vvm-XPS-8960:~$ pip install monailabel==0.8.2rc3 Collecting monailabel==0.8.2rc3 Downloading monailabel-0.8.2rc3-202404160240-py3-none-any.whl.metadata (22 kB) Requirement already satisfied: bcrypt==4.0.1 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (4.0.1) Requirement already satisfied: cachetools==5.3.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (5.3.0) Requirement already satisfied: dicomweb-client==0.59.1 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from dicomweb-client[gcp]==0.59.1->monailabel==0.8.2rc3) (0.59.1) Requirement already satisfied: einops>=0.6.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (0.8.0) Requirement already satisfied: expiring-dict==1.1.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (1.1.0) Requirement already satisfied: expiringdict==1.2.2 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (1.2.2) Collecting fastapi==0.110.0 (from monailabel==0.8.2rc3) Downloading fastapi-0.110.0-py3-none-any.whl.metadata (25 kB) Requirement already satisfied: filelock==3.11.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (3.11.0) Requirement already satisfied: girder-client==3.1.17 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (3.1.17) Requirement already satisfied: httpx==0.23.3 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (0.23.3) Requirement already satisfied: monai>=1.3.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (1.3.0) Requirement already satisfied: ninja==1.11.1 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (1.11.1) Requirement already satisfied: numpymaxflow==0.0.6 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (0.0.6) Requirement already satisfied: opencv-python-headless==4.7.0.72 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (4.7.0.72) Requirement already satisfied: passlib==1.7.4 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (1.7.4) Requirement already satisfied: pydantic<2.0.0,>=1.10.7 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (1.10.15) Requirement already satisfied: pydicom-seg==0.4.1 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (0.4.1) Requirement already satisfied: pydicom==2.3.1 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (2.3.1) Requirement already satisfied: pynetdicom==2.0.2 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (2.0.2) Requirement already satisfied: pynrrd==1.0.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (1.0.0) Requirement already satisfied: python-dotenv==1.0.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (1.0.0) Requirement already satisfied: python-jose==3.3.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from python-jose[cryptography]==3.3.0->monailabel==0.8.2rc3) (3.3.0) Collecting python-multipart==0.0.9 (from monailabel==0.8.2rc3) Downloading python_multipart-0.0.9-py3-none-any.whl.metadata (2.5 kB) Requirement already satisfied: pyyaml==6.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (6.0) Requirement already satisfied: requests-toolbelt==0.10.1 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (0.10.1) Requirement already satisfied: requests==2.28.2 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (2.28.2) Requirement already satisfied: schedule==1.1.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (1.1.0) Requirement already satisfied: scikit-learn in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (1.4.2) Requirement already satisfied: scipy in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (1.13.0) Requirement already satisfied: shapely==2.0.1 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (2.0.1) Requirement already satisfied: timeloop==1.0.2 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (1.0.2) Requirement already satisfied: uvicorn==0.21.1 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (0.21.1) Requirement already satisfied: watchdog==3.0.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monailabel==0.8.2rc3) (3.0.0) Requirement already satisfied: numpy>=1.19 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from dicomweb-client==0.59.1->dicomweb-client[gcp]==0.59.1->monailabel==0.8.2rc3) (1.26.4) Requirement already satisfied: retrying>=1.3.3 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from dicomweb-client==0.59.1->dicomweb-client[gcp]==0.59.1->monailabel==0.8.2rc3) (1.3.4) Requirement already satisfied: Pillow>=8.3 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from dicomweb-client==0.59.1->dicomweb-client[gcp]==0.59.1->monailabel==0.8.2rc3) (10.3.0) Requirement already satisfied: google-auth>=1.6 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from dicomweb-client[gcp]==0.59.1->monailabel==0.8.2rc3) (2.29.0) Requirement already satisfied: google-oauth>=1.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from dicomweb-client[gcp]==0.59.1->monailabel==0.8.2rc3) (1.0.1) Requirement already satisfied: sortedcontainers in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from expiring-dict==1.1.0->monailabel==0.8.2rc3) (2.4.0) Collecting starlette<0.37.0,>=0.36.3 (from fastapi==0.110.0->monailabel==0.8.2rc3) Downloading starlette-0.36.3-py3-none-any.whl.metadata (5.9 kB) Requirement already satisfied: typing-extensions>=4.8.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from fastapi==0.110.0->monailabel==0.8.2rc3) (4.11.0) Requirement already satisfied: click>=6.7 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from girder-client==3.1.17->monailabel==0.8.2rc3) (8.1.7) Requirement already satisfied: diskcache in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from girder-client==3.1.17->monailabel==0.8.2rc3) (5.6.3) Requirement already satisfied: certifi in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from httpx==0.23.3->monailabel==0.8.2rc3) (2024.2.2) Requirement already satisfied: httpcore<0.17.0,>=0.15.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from httpx==0.23.3->monailabel==0.8.2rc3) (0.16.3) Requirement already satisfied: rfc3986<2,>=1.3 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from rfc3986[idna2008]<2,>=1.3->httpx==0.23.3->monailabel==0.8.2rc3) (1.5.0) Requirement already satisfied: sniffio in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from httpx==0.23.3->monailabel==0.8.2rc3) (1.3.1) Requirement already satisfied: SimpleITK>1.2.4 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from pydicom-seg==0.4.1->monailabel==0.8.2rc3) (2.3.1) Requirement already satisfied: jsonschema<4.0.0,>=3.2.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from pydicom-seg==0.4.1->monailabel==0.8.2rc3) (3.2.0) Requirement already satisfied: nptyping in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from pynrrd==1.0.0->monailabel==0.8.2rc3) (2.5.0) Requirement already satisfied: ecdsa!=0.15 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from python-jose==3.3.0->python-jose[cryptography]==3.3.0->monailabel==0.8.2rc3) (0.19.0) Requirement already satisfied: rsa in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from python-jose==3.3.0->python-jose[cryptography]==3.3.0->monailabel==0.8.2rc3) (4.9) Requirement already satisfied: pyasn1 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from python-jose==3.3.0->python-jose[cryptography]==3.3.0->monailabel==0.8.2rc3) (0.6.0) Requirement already satisfied: cryptography>=3.4.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from python-jose[cryptography]==3.3.0->monailabel==0.8.2rc3) (42.0.7) Requirement already satisfied: charset-normalizer<4,>=2 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from requests==2.28.2->monailabel==0.8.2rc3) (3.3.2) Requirement already satisfied: idna<4,>=2.5 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from requests==2.28.2->monailabel==0.8.2rc3) (3.7) Requirement already satisfied: urllib3<1.27,>=1.21.1 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from requests==2.28.2->monailabel==0.8.2rc3) (1.26.18) Requirement already satisfied: h11>=0.8 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from uvicorn==0.21.1->monailabel==0.8.2rc3) (0.14.0) Requirement already satisfied: torch>=1.9 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monai>=1.3.0->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (2.3.0) Requirement already satisfied: gdown>=4.4.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (5.1.0) Requirement already satisfied: scikit-image>=0.14.2 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (0.22.0) Requirement already satisfied: tensorboard in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (2.16.2) Requirement already satisfied: nibabel in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (5.2.1) Requirement already satisfied: itk>=5.2 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (5.3.0) Requirement already satisfied: psutil in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (5.9.8) Requirement already satisfied: torchvision in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (0.18.0) Requirement already satisfied: mlflow in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (2.12.1) Requirement already satisfied: fire in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (0.6.0) Requirement already satisfied: lmdb in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (1.4.1) Requirement already satisfied: pytorch-ignite==0.4.11 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (0.4.11) Requirement already satisfied: tqdm>=4.47.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (4.66.4) Requirement already satisfied: openslide-python==1.1.2 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (1.1.2) Requirement already satisfied: packaging in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from pytorch-ignite==0.4.11->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (24.0) Requirement already satisfied: joblib>=1.2.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from scikit-learn->monailabel==0.8.2rc3) (1.4.2) Requirement already satisfied: threadpoolctl>=2.0.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from scikit-learn->monailabel==0.8.2rc3) (3.5.0) Requirement already satisfied: cffi>=1.12 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from cryptography>=3.4.0->python-jose[cryptography]==3.3.0->monailabel==0.8.2rc3) (1.16.0) Requirement already satisfied: six>=1.9.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from ecdsa!=0.15->python-jose==3.3.0->python-jose[cryptography]==3.3.0->monailabel==0.8.2rc3) (1.16.0) Requirement already satisfied: beautifulsoup4 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from gdown>=4.4.0->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (4.12.3) Requirement already satisfied: pyasn1-modules>=0.2.1 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from google-auth>=1.6->dicomweb-client[gcp]==0.59.1->monailabel==0.8.2rc3) (0.4.0) Requirement already satisfied: pyopenssl>=0.11 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from google-oauth>=1.0->dicomweb-client[gcp]==0.59.1->monailabel==0.8.2rc3) (24.1.0) Requirement already satisfied: anyio<5.0,>=3.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from httpcore<0.17.0,>=0.15.0->httpx==0.23.3->monailabel==0.8.2rc3) (4.3.0) Requirement already satisfied: itk-core==5.3.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from itk>=5.2->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (5.3.0) Requirement already satisfied: itk-numerics==5.3.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from itk>=5.2->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (5.3.0) Requirement already satisfied: itk-io==5.3.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from itk>=5.2->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (5.3.0) Requirement already satisfied: itk-filtering==5.3.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from itk>=5.2->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (5.3.0) Requirement already satisfied: itk-registration==5.3.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from itk>=5.2->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (5.3.0) Requirement already satisfied: itk-segmentation==5.3.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from itk>=5.2->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (5.3.0) Requirement already satisfied: attrs>=17.4.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from jsonschema<4.0.0,>=3.2.0->pydicom-seg==0.4.1->monailabel==0.8.2rc3) (23.2.0) Requirement already satisfied: pyrsistent>=0.14.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from jsonschema<4.0.0,>=3.2.0->pydicom-seg==0.4.1->monailabel==0.8.2rc3) (0.20.0) Requirement already satisfied: setuptools in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from jsonschema<4.0.0,>=3.2.0->pydicom-seg==0.4.1->monailabel==0.8.2rc3) (69.5.1) Requirement already satisfied: networkx>=2.8 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from scikit-image>=0.14.2->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (3.2.1) Requirement already satisfied: imageio>=2.27 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from scikit-image>=0.14.2->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (2.34.1) Requirement already satisfied: tifffile>=2022.8.12 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from scikit-image>=0.14.2->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (2024.5.3) Requirement already satisfied: lazy_loader>=0.3 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from scikit-image>=0.14.2->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (0.4) Requirement already satisfied: sympy in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from torch>=1.9->monai>=1.3.0->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (1.12) Requirement already satisfied: jinja2 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from torch>=1.9->monai>=1.3.0->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (3.1.4) Requirement already satisfied: fsspec in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from torch>=1.9->monai>=1.3.0->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (2024.3.1) Requirement already satisfied: nvidia-cuda-nvrtc-cu12==12.1.105 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from torch>=1.9->monai>=1.3.0->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (12.1.105) Requirement already satisfied: nvidia-cuda-runtime-cu12==12.1.105 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from torch>=1.9->monai>=1.3.0->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (12.1.105) Requirement already satisfied: nvidia-cuda-cupti-cu12==12.1.105 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from torch>=1.9->monai>=1.3.0->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (12.1.105) Requirement already satisfied: nvidia-cudnn-cu12==8.9.2.26 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from torch>=1.9->monai>=1.3.0->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (8.9.2.26) Requirement already satisfied: nvidia-cublas-cu12==12.1.3.1 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from torch>=1.9->monai>=1.3.0->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (12.1.3.1) Requirement already satisfied: nvidia-cufft-cu12==11.0.2.54 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from torch>=1.9->monai>=1.3.0->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (11.0.2.54) Requirement already satisfied: nvidia-curand-cu12==10.3.2.106 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from torch>=1.9->monai>=1.3.0->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (10.3.2.106) Requirement already satisfied: nvidia-cusolver-cu12==11.4.5.107 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from torch>=1.9->monai>=1.3.0->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (11.4.5.107) Requirement already satisfied: nvidia-cusparse-cu12==12.1.0.106 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from torch>=1.9->monai>=1.3.0->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (12.1.0.106) Requirement already satisfied: nvidia-nccl-cu12==2.20.5 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from torch>=1.9->monai>=1.3.0->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (2.20.5) Requirement already satisfied: nvidia-nvtx-cu12==12.1.105 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from torch>=1.9->monai>=1.3.0->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (12.1.105) Requirement already satisfied: triton==2.3.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from torch>=1.9->monai>=1.3.0->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (2.3.0) Requirement already satisfied: nvidia-nvjitlink-cu12 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from nvidia-cusolver-cu12==11.4.5.107->torch>=1.9->monai>=1.3.0->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (12.4.127) Requirement already satisfied: termcolor in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from fire->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (2.4.0) Requirement already satisfied: Flask<4 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (3.0.3) Requirement already satisfied: alembic!=1.10.0,<2 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (1.13.1) Requirement already satisfied: cloudpickle<4 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (3.0.0) Requirement already satisfied: docker<8,>=4.0.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (7.0.0) Requirement already satisfied: entrypoints<1 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (0.4) Requirement already satisfied: gitpython<4,>=3.1.9 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (3.1.43) Requirement already satisfied: graphene<4 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (3.3) Requirement already satisfied: importlib-metadata!=4.7.0,<8,>=3.7.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (7.1.0) Requirement already satisfied: markdown<4,>=3.3 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (3.6) Requirement already satisfied: matplotlib<4 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (3.8.4) Requirement already satisfied: pandas<3 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (2.2.2) Requirement already satisfied: protobuf<6,>=3.12.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (5.26.1) Requirement already satisfied: pyarrow<16,>=4.0.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (15.0.2) Requirement already satisfied: pytz<2025 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (2024.1) Requirement already satisfied: querystring-parser<2 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (1.2.4) Requirement already satisfied: sqlalchemy<3,>=1.4.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (2.0.30) Requirement already satisfied: sqlparse<1,>=0.4.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (0.5.0) Requirement already satisfied: gunicorn<22 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (21.2.0) Requirement already satisfied: absl-py>=0.4 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from tensorboard->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (2.1.0) Requirement already satisfied: grpcio>=1.48.2 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from tensorboard->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (1.63.0) Requirement already satisfied: tensorboard-data-server<0.8.0,>=0.7.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from tensorboard->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (0.7.2) Requirement already satisfied: werkzeug>=1.0.1 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from tensorboard->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (3.0.3) Requirement already satisfied: Mako in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from alembic!=1.10.0,<2->mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (1.3.3) Requirement already satisfied: exceptiongroup>=1.0.2 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from anyio<5.0,>=3.0->httpcore<0.17.0,>=0.15.0->httpx==0.23.3->monailabel==0.8.2rc3) (1.2.1) Requirement already satisfied: pycparser in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from cffi>=1.12->cryptography>=3.4.0->python-jose[cryptography]==3.3.0->monailabel==0.8.2rc3) (2.22) Requirement already satisfied: itsdangerous>=2.1.2 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from Flask<4->mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (2.2.0) Requirement already satisfied: blinker>=1.6.2 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from Flask<4->mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (1.8.2) Requirement already satisfied: gitdb<5,>=4.0.1 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from gitpython<4,>=3.1.9->mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (4.0.11) Requirement already satisfied: graphql-core<3.3,>=3.1 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from graphene<4->mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (3.2.3) Requirement already satisfied: graphql-relay<3.3,>=3.1 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from graphene<4->mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (3.2.0) Requirement already satisfied: aniso8601<10,>=8 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from graphene<4->mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (9.0.1) Requirement already satisfied: zipp>=0.5 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from importlib-metadata!=4.7.0,<8,>=3.7.0->mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (3.18.1) Requirement already satisfied: MarkupSafe>=2.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from jinja2->torch>=1.9->monai>=1.3.0->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (2.1.5) Requirement already satisfied: contourpy>=1.0.1 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from matplotlib<4->mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (1.2.1) Requirement already satisfied: cycler>=0.10 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from matplotlib<4->mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (0.12.1) Requirement already satisfied: fonttools>=4.22.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from matplotlib<4->mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (4.51.0) Requirement already satisfied: kiwisolver>=1.3.1 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from matplotlib<4->mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (1.4.5) Requirement already satisfied: pyparsing>=2.3.1 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from matplotlib<4->mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (3.1.2) Requirement already satisfied: python-dateutil>=2.7 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from matplotlib<4->mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (2.9.0.post0) Requirement already satisfied: importlib-resources>=3.2.0 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from matplotlib<4->mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (6.4.0) Requirement already satisfied: tzdata>=2022.7 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from pandas<3->mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (2024.1) Requirement already satisfied: greenlet!=0.4.17 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from sqlalchemy<3,>=1.4.0->mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (3.0.3) Requirement already satisfied: soupsieve>1.2 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from beautifulsoup4->gdown>=4.4.0->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (2.5) Requirement already satisfied: PySocks!=1.5.7,>=1.5.6 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from requests[socks]->gdown>=4.4.0->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (1.7.1) Requirement already satisfied: mpmath>=0.19 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from sympy->torch>=1.9->monai>=1.3.0->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (1.3.0) Requirement already satisfied: smmap<6,>=3.0.1 in ./anaconda3/envs/monailabel/lib/python3.9/site-packages (from gitdb<5,>=4.0.1->gitpython<4,>=3.1.9->mlflow->monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.0->monailabel==0.8.2rc3) (5.0.1) Downloading monailabel-0.8.2rc3-202404160240-py3-none-any.whl (11.9 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 11.9/11.9 MB 1.9 MB/s eta 0:00:00 Downloading fastapi-0.110.0-py3-none-any.whl (92 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 92.1/92.1 kB 4.1 MB/s eta 0:00:00 Downloading python_multipart-0.0.9-py3-none-any.whl (22 kB) Downloading starlette-0.36.3-py3-none-any.whl (71 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 71.5/71.5 kB 9.0 MB/s eta 0:00:00 Installing collected packages: python-multipart, starlette, fastapi, monailabel Attempting uninstall: python-multipart Found existing installation: python-multipart 0.0.6 Uninstalling python-multipart-0.0.6: Successfully uninstalled python-multipart-0.0.6 Attempting uninstall: starlette Found existing installation: starlette 0.26.1 Uninstalling starlette-0.26.1: Successfully uninstalled starlette-0.26.1 Attempting uninstall: fastapi Found existing installation: fastapi 0.95.0 Uninstalling fastapi-0.95.0: Successfully uninstalled fastapi-0.95.0 Attempting uninstall: monailabel Found existing installation: monailabel 0.8.1 Uninstalling monailabel-0.8.1: Successfully uninstalled monailabel-0.8.1 Successfully installed fastapi-0.110.0 monailabel-0.8.2rc3 python-multipart-0.0.9 starlette-0.36.3
I had already installed this version but the issue still exists
DC-hydrid
commented
6 months ago The same problem. However, I once install the model successfully but when I use the model today, I found the problem again and can not solve it.
DC-hydrid
commented
6 months ago The problem solved but I did nothing. It recovers.
Antoniaaa
commented
6 months ago I added this code ,then the problem sloved. if zoo_source == "github": zoo_source = "https://github.com/Project-MONAI/MONAI-Model-Zoo.git" models = conf.get(conf_key)
(monailabel) huyao@vvm-XPS-8960:~$ monailabel start_server --app /home/huyao/apps/monaibundle --studies /home/huyao/data/Task08_HepaticVessel/imagesTr --conf models swin_unetr_btcv_segmentation Using PYTHONPATH=/home/huyao/anaconda3/envs:
[2024-05-08 10:13:55,639] [1657753] [MainThread] [INFO] (main:285) - USING:: version = False [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: app = /home/huyao/apps/monaibundle [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: studies = /home/huyao/data/Task08_HepaticVessel/imagesTr [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: verbose = INFO [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: conf = [['models', 'swin_unetr_btcv_segmentation']] [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: host = 0.0.0.0 [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: port = 8000 [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: uvicorn_app = monailabel.app:app [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: ssl_keyfile = None [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: ssl_certfile = None [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: ssl_keyfile_password = None [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: ssl_ca_certs = None [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: workers = None [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: limit_concurrency = None [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: access_log = False [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: root_path = / [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: log_level = info [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: log_config = None [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: dryrun = False [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:285) - USING:: action = start_server [2024-05-08 10:13:55,640] [1657753] [MainThread] [INFO] (main:296) - Allow Origins: ['*'] [2024-05-08 10:13:55,853] [1657753] [MainThread] [INFO] (uvicorn.error:74) - Started server process [1657753] [2024-05-08 10:13:55,853] [1657753] [MainThread] [INFO] (uvicorn.error:48) - Waiting for application startup. [2024-05-08 10:13:55,853] [1657753] [MainThread] [INFO] (monailabel.interfaces.utils.app:37) - Initializing App from: /home/huyao/apps/monaibundle; studies: /home/huyao/data/Task08_HepaticVessel/imagesTr; conf: {'models': 'swin_unetr_btcv_segmentation'} [2024-05-08 10:13:55,861] [1657753] [MainThread] [INFO] (monailabel.utils.others.class_utils:57) - Subclass for MONAILabelApp Found: <class 'main.MyApp'>
Github access rate limit reached, please provide personal auth token by setting env MONAI_ZOO_AUTH_TOKEN or --conf auth_token
[2024-05-08 10:13:55,882] [1657753] [MainThread] [ERROR] (uvicorn.error:123) - Traceback (most recent call last):
File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/urllib3/connection.py", line 174, in _new_conn
conn = connection.create_connection(
File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/urllib3/util/connection.py", line 95, in create_connection
raise err
File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/urllib3/util/connection.py", line 85, in create_connection
sock.connect(sa)
ConnectionRefusedError: [Errno 111] Connection refused
During handling of the above exception, another exception occurred:
Traceback (most recent call last): File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/urllib3/connectionpool.py", line 715, in urlopen httplib_response = self._make_request( File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/urllib3/connectionpool.py", line 404, in _make_request self._validate_conn(conn) File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/urllib3/connectionpool.py", line 1058, in _validate_conn conn.connect() File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/urllib3/connection.py", line 363, in connect self.sock = conn = self._new_conn() File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/urllib3/connection.py", line 186, in _new_conn raise NewConnectionError( urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7ab4c2324100>: Failed to establish a new connection: [Errno 111] Connection refused
During handling of the above exception, another exception occurred:
Traceback (most recent call last): File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/requests/adapters.py", line 489, in send resp = conn.urlopen( File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/urllib3/connectionpool.py", line 799, in urlopen retries = retries.increment( File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/urllib3/util/retry.py", line 592, in increment raise MaxRetryError(_pool, url, error or ResponseError(cause)) urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='raw.githubusercontent.com', port=443): Max retries exceeded with url: /Project-MONAI/model-zoo/dev/models/model_info.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7ab4c2324100>: Failed to establish a new connection: [Errno 111] Connection refused'))
During handling of the above exception, another exception occurred:
Traceback (most recent call last): File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/monailabel/utils/others/generic.py", line 261, in get_zoo_bundle zoo_info = get_all_bundles_list(auth_token=auth_token) File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/monai/bundle/scripts.py", line 624, in get_all_bundles_list bundles_info = _get_all_bundles_info(repo=repo, tag=tag, auth_token=auth_token) File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/monai/bundle/scripts.py", line 568, in _get_all_bundles_info resp = requests_get(request_url) File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/requests/api.py", line 73, in get return request("get", url, params=params, kwargs) File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/requests/api.py", line 59, in request return session.request(method=method, url=url, kwargs) File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/requests/sessions.py", line 587, in request resp = self.send(prep, send_kwargs) File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/requests/sessions.py", line 701, in send r = adapter.send(request, kwargs) File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/requests/adapters.py", line 565, in send raise ConnectionError(e, request=request) requests.exceptions.ConnectionError: HTTPSConnectionPool(host='raw.githubusercontent.com', port=443): Max retries exceeded with url: /Project-MONAI/model-zoo/dev/models/model_info.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7ab4c2324100>: Failed to establish a new connection: [Errno 111] Connection refused'))
During handling of the above exception, another exception occurred:
Traceback (most recent call last): File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/starlette/routing.py", line 677, in lifespan async with self.lifespan_context(app) as maybe_state: File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/starlette/routing.py", line 566, in aenter await self._router.startup() File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/starlette/routing.py", line 654, in startup await handler() File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/monailabel/app.py", line 108, in startup_event instance = app_instance() File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/monailabel/interfaces/utils/app.py", line 50, in app_instance app = c(app_dir=app_dir, studies=studies, conf=conf) File "/home/huyao/apps/monaibundle/main.py", line 36, in init self.models = get_bundle_models(app_dir, conf) File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/monailabel/utils/others/generic.py", line 354, in get_bundle_models bundles = get_zoo_bundle(model_dir, conf, models, conf_key) File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/site-packages/monailabel/utils/others/generic.py", line 269, in get_zoo_bundle exit(-1) File "/home/huyao/anaconda3/envs/monailabel/lib/python3.9/_sitebuiltins.py", line 26, in call raise SystemExit(code) SystemExit: -1
[2024-05-08 10:13:55,882] [1657753] [MainThread] [ERROR] (uvicorn.error:59) - Application startup failed. Exiting.