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Project-MONAI / MONAILabel

MONAI Label is an intelligent open source image labeling and learning tool.
https://docs.monai.io/projects/label
Apache License 2.0
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MONAI Label Pathology Tutorial (monailabel_HelloWorld_radiology_3dslicer) #1704

Open jesamir opened 2 weeks ago

jesamir commented 2 weeks ago

Describe the bug The pathology tutorial states that the MONAI Label extension works with versions of QuPath <=0.5.0, but I found it not working with version 0.5.0. I utilized version 0.4.3, and the extension was able to work with QuPath.

Server logs If applicable attach 100+ lines of monailabel server logs which covers the error trace etc...

To Reproduce Steps to reproduce the behavior:

  1. Go to tutorials/monailabel /monailabel_pathology_nuclei_segmentation_QuPath.ipynb

Expected behavior A clear and concise description of what you expected to happen.

Screenshots QuPathError

Environment

Ensuring you use the relevant python executable, please paste the output of:

python -c 'import monai; monai.config.print_debug_info()'

Additional context Add any other context about the problem here.