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Project-MONAI / model-zoo

MONAI Model Zoo that hosts models in the MONAI Bundle format.
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What's the correct segmentation label match the organ name in Wholebody ct segmentation pre-trained model? #396

Closed ytl0623 closed 5 months ago

ytl0623 commented 1 year ago

Hi, I used to execute inference with Wholebody ct segmentation from monai model zoo.

But after I finished the process the output image is NOT match the organ list (like picture below).

The organ list (I supposed) is sort by A-Z, but the real output image is red text. image

So, what is the correct organ list with Wholebody ct segmentation model, and where can I find it?

Thanks!

tangy5 commented 1 year ago

Thanks for reporting, this list follows the order of TotalSegmentator dataset. We will look into the order and see if they are properly set.

tangy5 commented 1 year ago

Hi @ytl0623 , how do you get the above screen shot's list?

If you are looking for a organ list, it's here: https://github.com/Project-MONAI/model-zoo/blob/dev/models/wholeBody_ct_segmentation/configs/metadata.json

I checked in 3D Slicer, the list is not sorted in A-Z, and the organ names should be correct.

Let us know if this list is not correctly working in other viewers.