#588 - Pediatric Abdominal CT Segmentation Bundle

[EmergentBehaviour]

Description

This is a submission for the MONAI Bundle of a Pediatric Abdominal CT Segmentation model from the Children's Artificial Intelligence Imaging Research (CAIIR) Center at Cincinnati Children's Hospital.

Metadata check passed, torchdynamo could not install / run during code-formatting script check. Open to any fixes or alternatives for code-formatting check / confirmation. Please feel free to write any questions, comments or suggestions.

Status

Ready for Feedback / Publication

Please ensure all the checkboxes:

• [ ] Codeformat tests passed locally by running ./runtests.sh --codeformat.
• [x] In-line docstrings updated.
• [x] Update version and changelog in metadata.json if changing an existing bundle.
• [x] Please ensure the naming rules in config files meet our requirements (please refer to: CONTRIBUTING.md).
• [x] Ensure versions of packages such as monai, pytorch and numpy are correct in metadata.json.
• [x] Descriptions should be consistent with the content, such as eval_metrics of the provided weights and TorchScript modules.
• [x] Files larger than 25MB are excluded and replaced by providing download links in large_files.yml.
• [x] Avoid using path that contains personal information within config files (such as use /home/your_name/ for "bundle_root").

[yiheng-wang-nv]

Hi @EmergentBehaviour , could you check the failed CI tests? Thanks!

[EmergentBehaviour]

Hi @EmergentBehaviour , could you check the failed CI tests? Thanks!

Hello, I've since fixed the dependency versioning that caused the pre-merge to fail, however running some of the ci tests locally (like that contained within ci/run_regular_tests_cpu.sh) have errors with the checksum to download the latest bundles:

Traceback (most recent call last): File "/workspace/model-zoo/ci/download_latest_bundle.py", line 44, in download_latest_bundle(bundle_name, models_path, download_path) File "/workspace/model-zoo/ci/download_latest_bundle.py", line 23, in download_latest_bundle checksum = get_version_checksum(bundle_name=bundle_name, version=version, model_info_path=model_info_path) File "/workspace/model-zoo/ci/utils.py", line 128, in get_version_checksum return model_info_dict[f"{bundle_name}_v{version}"]["checksum"] KeyError: '_v1.0.9'

Is there something I can do to fix this?