Closed wyli closed 1 year ago
[2023-09-25T13:52:23.422Z] Running ./acceleration/multi_gpu_test.ipynb [2023-09-25T13:52:23.422Z] Checking PEP8 compliance... [2023-09-25T13:52:23.677Z] Running notebook... [2023-09-25T13:52:23.677Z] Before: [2023-09-25T13:52:23.677Z] "max_epochs = 2\n", [2023-09-25T13:52:23.677Z] "2023-01-20 14:16:00,009 - Engine run starting with max_epochs=2.\n", [2023-09-25T13:52:23.677Z] "2023-01-20 14:16:00,208 - Engine run starting with max_epochs=2.\n", [2023-09-25T13:52:23.677Z] "2023-01-20 14:16:01,402 - Engine run starting with max_epochs=2.\n", [2023-09-25T13:52:23.677Z] After: [2023-09-25T13:52:23.677Z] "max_epochs = 1\n", [2023-09-25T13:52:23.677Z] "2023-01-20 14:16:00,009 - Engine run starting with max_epochs = 1.\n", [2023-09-25T13:52:23.677Z] "2023-01-20 14:16:00,208 - Engine run starting with max_epochs = 1.\n", [2023-09-25T13:52:23.677Z] "2023-01-20 14:16:01,402 - Engine run starting with max_epochs = 1.\n", [2023-09-25T13:52:30.212Z] MONAI version: 1.3.0rc1+4.g18a671a7 [2023-09-25T13:52:30.213Z] Numpy version: 1.22.2 [2023-09-25T13:52:30.213Z] Pytorch version: 2.1.0a0+29c30b1 [2023-09-25T13:52:30.213Z] MONAI flags: HAS_EXT = False, USE_COMPILED = False, USE_META_DICT = False [2023-09-25T13:52:30.213Z] MONAI rev id: 18a671a7f12389dd8263a4c2232196dcca814bb9 [2023-09-25T13:52:30.213Z] MONAI __file__: /home/jenkins/agent/workspace/Monai-notebooks/MONAI/monai/__init__.py [2023-09-25T13:52:30.213Z] [2023-09-25T13:52:30.213Z] Optional dependencies: [2023-09-25T13:52:30.213Z] Pytorch Ignite version: 0.4.11 [2023-09-25T13:52:30.213Z] ITK version: 5.3.0 [2023-09-25T13:52:30.213Z] Nibabel version: 5.1.0 [2023-09-25T13:52:30.213Z] scikit-image version: 0.21.0 [2023-09-25T13:52:30.213Z] scipy version: 1.11.1 [2023-09-25T13:52:30.213Z] Pillow version: 9.2.0 [2023-09-25T13:52:30.213Z] Tensorboard version: 2.9.0 [2023-09-25T13:52:30.213Z] gdown version: 4.7.1 [2023-09-25T13:52:30.213Z] TorchVision version: 0.16.0a0 [2023-09-25T13:52:30.213Z] tqdm version: 4.65.0 [2023-09-25T13:52:30.213Z] lmdb version: 1.4.1 [2023-09-25T13:52:30.213Z] psutil version: 5.9.4 [2023-09-25T13:52:30.213Z] pandas version: 1.5.2 [2023-09-25T13:52:30.213Z] einops version: 0.6.1 [2023-09-25T13:52:30.213Z] transformers version: 4.21.3 [2023-09-25T13:52:30.213Z] mlflow version: 2.7.1 [2023-09-25T13:52:30.213Z] pynrrd version: 1.0.0 [2023-09-25T13:52:30.213Z] clearml version: 1.13.0 [2023-09-25T13:52:30.213Z] [2023-09-25T13:52:30.213Z] For details about installing the optional dependencies, please visit: [2023-09-25T13:52:30.213Z] https://docs.monai.io/en/latest/installation.html#installing-the-recommended-dependencies [2023-09-25T13:52:30.213Z] [2023-09-25T13:52:31.594Z] papermill --progress-bar -k python3 [2023-09-25T13:52:32.156Z] /usr/local/lib/python3.10/dist-packages/papermill/iorw.py:153: UserWarning: the file is not specified with any extension : - [2023-09-25T13:52:32.156Z] warnings.warn( [2023-09-25T13:52:47.782Z] Executing: 0%| | 0/13 [00:00<?, ?cell/s] Executing: 8%|▊ | 1/13 [00:01<00:14, 1.23s/cell] Executing: 23%|██▎ | 3/13 [00:08<00:29, 2.99s/cell] Executing: 38%|███▊ | 5/13 [00:14<00:23, 2.94s/cell] Executing: 38%|███▊ | 5/13 [00:15<00:25, 3.15s/cell] [2023-09-25T13:52:47.783Z] /usr/local/lib/python3.10/dist-packages/papermill/iorw.py:153: UserWarning: the file is not specified with any extension : - [2023-09-25T13:52:47.783Z] warnings.warn( [2023-09-25T13:52:47.783Z] Traceback (most recent call last): [2023-09-25T13:52:47.783Z] File "/usr/local/bin/papermill", line 8, in <module> [2023-09-25T13:52:47.783Z] sys.exit(papermill()) [2023-09-25T13:52:47.783Z] File "/usr/local/lib/python3.10/dist-packages/click/core.py", line 1157, in __call__ [2023-09-25T13:52:47.783Z] return self.main(*args, **kwargs) [2023-09-25T13:52:47.783Z] File "/usr/local/lib/python3.10/dist-packages/click/core.py", line 1078, in main [2023-09-25T13:52:47.783Z] rv = self.invoke(ctx) [2023-09-25T13:52:47.783Z] File "/usr/local/lib/python3.10/dist-packages/click/core.py", line 1434, in invoke [2023-09-25T13:52:47.783Z] return ctx.invoke(self.callback, **ctx.params) [2023-09-25T13:52:47.783Z] File "/usr/local/lib/python3.10/dist-packages/click/core.py", line 783, in invoke [2023-09-25T13:52:47.783Z] return __callback(*args, **kwargs) [2023-09-25T13:52:47.783Z] File "/usr/local/lib/python3.10/dist-packages/click/decorators.py", line 33, in new_func [2023-09-25T13:52:47.783Z] return f(get_current_context(), *args, **kwargs) [2023-09-25T13:52:47.783Z] File "/usr/local/lib/python3.10/dist-packages/papermill/cli.py", line 250, in papermill [2023-09-25T13:52:47.783Z] execute_notebook( [2023-09-25T13:52:47.783Z] File "/usr/local/lib/python3.10/dist-packages/papermill/execute.py", line 128, in execute_notebook [2023-09-25T13:52:47.783Z] raise_for_execution_errors(nb, output_path) [2023-09-25T13:52:47.783Z] File "/usr/local/lib/python3.10/dist-packages/papermill/execute.py", line 232, in raise_for_execution_errors [2023-09-25T13:52:47.783Z] raise error [2023-09-25T13:52:47.783Z] papermill.exceptions.PapermillExecutionError: [2023-09-25T13:52:47.783Z] --------------------------------------------------------------------------- [2023-09-25T13:52:47.783Z] Exception encountered at "In [2]": [2023-09-25T13:52:47.783Z] --------------------------------------------------------------------------- [2023-09-25T13:52:47.783Z] ImportError Traceback (most recent call last) [2023-09-25T13:52:47.783Z] Cell In[2], line 3 [2023-09-25T13:52:47.783Z] 1 import torch [2023-09-25T13:52:47.783Z] 2 from monai.config import print_config [2023-09-25T13:52:47.783Z] ----> 3 from monai.engines import create_multigpu_supervised_trainer [2023-09-25T13:52:47.783Z] 4 from monai.networks.nets import UNet [2023-09-25T13:52:47.783Z] 6 print_config() [2023-09-25T13:52:47.783Z] [2023-09-25T13:52:47.783Z] ImportError: cannot import name 'create_multigpu_supervised_trainer' from 'monai.engines' (/home/jenkins/agent/workspace/Monai-notebooks/MONAI/monai/engines/__init__.py)
wyli
commented
1 year ago wyli
commented
1 year ago