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ProjectPythia / pythia-foundations

Jupyterbook source for the Foundations collection
http://foundations.projectpythia.org
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Issue on page /core/pandas/pandas.html #292

Closed williamnicewonger closed 2 years ago

williamnicewonger commented 2 years ago

When trying to run the line "from pythia_datasets import datasets" receiving error:

ModuleNotFoundError Traceback (most recent call last) Input In [3], in <cell line: 2>() 1 import pandas as pd ----> 2 from pythia_datasets import datasets

ModuleNotFoundError: No module named 'pythia_datasets'

Cescoooo commented 2 years ago

Try to re-install it or check your tool settings about modules or write DATASETS like this

brian-rose commented 2 years ago

Hi @williamnicewonger, thanks for this report.

How / where are you running this notebook? Did you set up the necessary conda environment as described here: https://foundations.projectpythia.org/preamble/how-to-use.html#interacting-with-jupyter-books-locally?

williamnicewonger commented 2 years ago

Hi Brian,

No I don’t think I set up the conda environment correctly. I’m so new to python and coding in general. Thanks for sending me the link. I’ll try that and get back to you.

Respectfully, William

On Fri, May 27, 2022 at 08:51 Brian Rose @.***> wrote:

Hi @williamnicewonger https://github.com/williamnicewonger, thanks for this report.

How / where are you running this notebook? Did you set up the necessary conda environment as described here: https://foundations.projectpythia.org/preamble/how-to-use.html#interacting-with-jupyter-books-locally ?

— Reply to this email directly, view it on GitHub https://github.com/ProjectPythia/pythia-foundations/issues/292#issuecomment-1139692813, or unsubscribe https://github.com/notifications/unsubscribe-auth/AZKG7YZ4DSNZDX2KNIBWLMLVMDOOHANCNFSM5W6F5MLQ . You are receiving this because you were mentioned.Message ID: @.***>

brian-rose commented 2 years ago

Hi William,

Great! Please take a look through the earlier sections of Pythia Foundations for lots more guidance on how to get started.

williamnicewonger commented 2 years ago

Hi Brian,

I am still having issues accessing the data associated with “from pythia_datasets import DATASETS”.

I keep getting errors saying no module named ‘pythia_datasets’

I created the environment correctly but still nothing has changed.

Any ideas on how to fix this?

Respectfully, William

On Fri, May 27, 2022 at 10:15 Brian Rose @.***> wrote:

Hi William,

Great! Please take a look through the earlier sections of Pythia Foundations https://foundations.projectpythia.org/landing-page.html for lots more guidance on how to get started.

— Reply to this email directly, view it on GitHub https://github.com/ProjectPythia/pythia-foundations/issues/292#issuecomment-1139762549, or unsubscribe https://github.com/notifications/unsubscribe-auth/AZKG7Y3DX7PNC57SDBMCBBDVMDYIZANCNFSM5W6F5MLQ . You are receiving this because you were mentioned.Message ID: @.***>

brian-rose commented 2 years ago

Ok, we'll need a little more information.

Trying doing this from the same terminal you used to launch Jupyter notebook

conda list

and copy/paste the output here. This will show what's in your currently activated conda environment.

williamnicewonger commented 2 years ago

anaconda3/envs/pythia-book-dev: #

Name Version Build Channel

alabaster 0.7.12 py_0 conda-forge anyio 3.6.1 py310h2ec42d9_0 conda-forge aom 3.3.0 h96cf925_1 conda-forge appdirs 1.4.4 pyh9f0ad1d_0 conda-forge appnope 0.1.3 pyhd8ed1ab_0 conda-forge argon2-cffi 21.3.0 pyhd8ed1ab_0 conda-forge argon2-cffi-bindings 21.2.0 py310h1961e1f_2 conda-forge asttokens 2.0.5 pyhd8ed1ab_0 conda-forge attrs 21.4.0 pyhd8ed1ab_0 conda-forge babel 2.10.1 pyhd8ed1ab_0 conda-forge backcall 0.2.0 pyh9f0ad1d_0 conda-forge backports 1.0 py_2 conda-forge backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge beautifulsoup4 4.11.1 pyha770c72_0 conda-forge bleach 5.0.0 pyhd8ed1ab_0 conda-forge brotli 1.0.9 h5eb16cf_7 conda-forge brotli-bin 1.0.9 h5eb16cf_7 conda-forge brotlipy 0.7.0 py310h1961e1f_1004 conda-forge bzip2 1.0.8 h0d85af4_4 conda-forge c-ares 1.18.1 h0d85af4_0 conda-forge ca-certificates 2022.5.18.1 h033912b_0 conda-forge cartopy 0.20.2 py310he18ef84_4 conda-forge certifi 2022.5.18.1 py310h2ec42d9_0 conda-forge cffi 1.15.0 py310hcc37b68_0 conda-forge cfgv 3.3.1 pyhd8ed1ab_0 conda-forge cftime 1.6.0 py310h7f5fb2b_1 conda-forge charset-normalizer 2.0.12 pyhd8ed1ab_0 conda-forge click 8.1.3 py310h2ec42d9_0 conda-forge click-completion 0.5.2 py310h2ec42d9_3 conda-forge click-log 0.3.2 pyh9f0ad1d_0 conda-forge colorama 0.4.4 pyh9f0ad1d_0 conda-forge cryptography 37.0.2 py310h52c3658_0 conda-forge curl 7.83.1 h372c54d_0 conda-forge cycler 0.11.0 pyhd8ed1ab_0 conda-forge dataclasses 0.8 pyhc8e2a94_3 conda-forge debugpy 1.6.0 py310h9d931ec_0 conda-forge decorator 5.1.1 pyhd8ed1ab_0 conda-forge defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge distlib 0.3.4 pyhd8ed1ab_0 conda-forge docutils 0.15.2 py310h2ec42d9_3 conda-forge entrypoints 0.4 pyhd8ed1ab_0 conda-forge executing 0.8.3 pyhd8ed1ab_0 conda-forge ffmpeg 5.0.1 hf5e6f72_2 conda-forge filelock 3.7.0 pyhd8ed1ab_0 conda-forge flit-core 3.7.1 pyhd8ed1ab_0 conda-forge fonttools 4.33.3 py310h6c45266_0 conda-forge freetype 2.10.4 h4cff582_1 conda-forge geos 3.10.2 he49afe7_0 conda-forge gettext 0.19.8.1 hd1a6beb_1008 conda-forge giflib 5.2.1 hbcb3906_2 conda-forge gitdb 4.0.9 pyhd8ed1ab_0 conda-forge gitpython 3.1.27 pyhd8ed1ab_0 conda-forge gmp 6.2.1 h2e338ed_0 conda-forge gnutls 3.6.13 h756fd2b_1 conda-forge hdf4 4.2.15 hefd3b78_3 conda-forge hdf5 1.12.1 nompi_ha60fbc9_104 conda-forge icu 70.1 h96cf925_0 conda-forge identify 2.5.1 pyhd8ed1ab_0 conda-forge idna 3.3 pyhd8ed1ab_0 conda-forge imagesize 1.3.0 pyhd8ed1ab_0 conda-forge importlib-metadata 4.11.4 py310h2ec42d9_0 conda-forge importlib_metadata 4.11.4 hd8ed1ab_0 conda-forge importlib_resources 5.7.1 pyhd8ed1ab_1 conda-forge ipykernel 6.13.0 py310ha188af9_0 conda-forge ipython 8.3.0 py310h2ec42d9_0 conda-forge ipython_genutils 0.2.0 py_1 conda-forge ipywidgets 7.7.0 pyhd8ed1ab_0 conda-forge jedi 0.18.1 py310h2ec42d9_1 conda-forge jinja2 3.0.3 pyhd8ed1ab_0 conda-forge jpeg 9e h5eb16cf_1 conda-forge json5 0.9.5 pyh9f0ad1d_0 conda-forge jsonschema 3.2.0 pyhd8ed1ab_3 conda-forge jupyter-book 0.12.3 pyhd8ed1ab_0 conda-forge jupyter-cache 0.4.3 pyhd8ed1ab_0 conda-forge jupyter-server-mathjax 0.2.5 pyhc268e32_0 conda-forge jupyter-sphinx 0.3.2 pyhd8ed1ab_1 conda-forge jupyter_client 7.3.1 pyhd8ed1ab_0 conda-forge jupyter_core 4.10.0 py310h2ec42d9_0 conda-forge jupyter_server 1.17.0 pyhd8ed1ab_0 conda-forge jupyterlab 3.4.2 pyhd8ed1ab_0 conda-forge jupyterlab_pygments 0.2.2 pyhd8ed1ab_0 conda-forge jupyterlab_server 2.14.0 pyhd8ed1ab_0 conda-forge jupyterlab_widgets 1.1.0 pyhd8ed1ab_0 conda-forge kiwisolver 1.4.2 py310h6be76da_1 conda-forge krb5 1.19.3 hb49756b_0 conda-forge lame 3.100 h35c211d_1001 conda-forge latexcodec 2.0.1 pyh9f0ad1d_0 conda-forge lcms2 2.12 h577c468_0 conda-forge lerc 3.0 he49afe7_0 conda-forge libblas 3.9.0 14_osx64_openblas conda-forge libbrotlicommon 1.0.9 h5eb16cf_7 conda-forge libbrotlidec 1.0.9 h5eb16cf_7 conda-forge libbrotlienc 1.0.9 h5eb16cf_7 conda-forge libcblas 3.9.0 14_osx64_openblas conda-forge libcurl 7.83.1 h372c54d_0 conda-forge libcxx 14.0.4 hc203e6f_0 conda-forge libdeflate 1.10 h0d85af4_0 conda-forge libedit 3.1.20191231 h0678c8f_2 conda-forge libev 4.33 haf1e3a3_1 conda-forge libffi 3.4.2 h0d85af4_5 conda-forge libgfortran 5.0.0 9_3_0_h6c81a4c_23 conda-forge libgfortran5 9.3.0 h6c81a4c_23 conda-forge libiconv 1.16 haf1e3a3_0 conda-forge liblapack 3.9.0 14_osx64_openblas conda-forge libnetcdf 4.8.1 nompi_h6609ca0_102 conda-forge libnghttp2 1.47.0 h942079c_0 conda-forge libopenblas 0.3.20 openmp_hb3cd9ec_0 conda-forge libpng 1.6.37 h7cec526_2 conda-forge libsodium 1.0.18 hbcb3906_1 conda-forge libssh2 1.10.0 h52ee1ee_2 conda-forge libtiff 4.3.0 hfca7e8f_4 conda-forge libvpx 1.11.0 he49afe7_3 conda-forge libwebp 1.2.2 h28dabe5_0 conda-forge libwebp-base 1.2.2 h0d85af4_1 conda-forge libxcb 1.13 h0d85af4_1004 conda-forge libxml2 2.9.14 h08a9926_0 conda-forge libzip 1.8.0 h8b0c345_1 conda-forge libzlib 1.2.11 h6c3fc93_1014 conda-forge linkify-it-py 1.0.3 pyhd8ed1ab_0 conda-forge llvm-openmp 14.0.4 ha654fa7_0 conda-forge lz4-c 1.9.3 he49afe7_1 conda-forge markdown-it-py 1.1.0 pyhd8ed1ab_0 conda-forge markupsafe 2.1.1 py310h1961e1f_1 conda-forge matplotlib 3.5.2 py310h2ec42d9_0 conda-forge matplotlib-base 3.5.2 py310h4510841_0 conda-forge matplotlib-inline 0.1.3 pyhd8ed1ab_0 conda-forge mdit-py-plugins 0.2.8 pyhd8ed1ab_0 conda-forge mistune 0.8.4 py310he24745e_1005 conda-forge munkres 1.1.4 pyh9f0ad1d_0 conda-forge myst-nb 0.13.2 pyhd8ed1ab_0 conda-forge myst-parser 0.15.2 pyhd8ed1ab_0 conda-forge nbclassic 0.3.7 pyhd8ed1ab_0 conda-forge nbclient 0.5.13 pyhd8ed1ab_0 conda-forge nbconvert 6.5.0 pyhd8ed1ab_0 conda-forge nbconvert-core 6.5.0 pyhd8ed1ab_0 conda-forge nbconvert-pandoc 6.5.0 pyhd8ed1ab_0 conda-forge nbdime 3.1.1 pyhd8ed1ab_0 conda-forge nbformat 5.4.0 pyhd8ed1ab_0 conda-forge nc-time-axis 1.4.1 pyhd8ed1ab_0 conda-forge ncurses 6.3 h96cf925_1 conda-forge nest-asyncio 1.5.5 pyhd8ed1ab_0 conda-forge netcdf4 1.5.8 nompi_py310h1579a17_101 conda-forge nettle 3.6 hedd7734_0 conda-forge nodeenv 1.6.0 pyhd8ed1ab_0 conda-forge notebook 6.4.11 pyha770c72_0 conda-forge notebook-shim 0.1.0 pyhd8ed1ab_0 conda-forge numpy 1.22.4 py310hed37afb_0 conda-forge openh264 2.1.1 hfd3ada9_0 conda-forge openjpeg 2.4.0 h6e7aa92_1 conda-forge openssl 1.1.1o hfe4f2af_0 conda-forge packaging 21.3 pyhd8ed1ab_0 conda-forge pandas 1.4.2 py310h3099161_2 conda-forge pandoc 2.18 h694c41f_0 conda-forge pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge parso 0.8.3 pyhd8ed1ab_0 conda-forge pexpect 4.8.0 pyh9f0ad1d_2 conda-forge pickleshare 0.7.5 py_1003 conda-forge pillow 9.1.1 py310hb3240ae_0 conda-forge pip 22.1.1 pyhd8ed1ab_0 conda-forge platformdirs 2.5.1 pyhd8ed1ab_0 conda-forge pooch 1.6.0 pyhd8ed1ab_0 conda-forge pre-commit 2.19.0 py310h2ec42d9_0 conda-forge proj 9.0.0 h2364a93_1 conda-forge prometheus_client 0.14.1 pyhd8ed1ab_0 conda-forge prompt-toolkit 3.0.29 pyha770c72_0 conda-forge psutil 5.9.1 py310h6c45266_0 conda-forge pthread-stubs 0.4 hc929b4f_1001 conda-forge ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge pybtex 0.24.0 pyhd8ed1ab_2 conda-forge pybtex-docutils 1.0.1 py310h2ec42d9_1 conda-forge pycparser 2.21 pyhd8ed1ab_0 conda-forge pydata-sphinx-theme 0.7.2 pyhd8ed1ab_0 conda-forge pygments 2.12.0 pyhd8ed1ab_0 conda-forge pyopenssl 22.0.0 pyhd8ed1ab_0 conda-forge pyparsing 3.0.9 pyhd8ed1ab_0 conda-forge pyproj 3.3.1 py310h6c09501_0 conda-forge pyrsistent 0.18.1 py310h1961e1f_1 conda-forge pyshp 2.3.0 pyhd8ed1ab_0 conda-forge pysocks 1.7.1 py310h2ec42d9_5 conda-forge pythia-datasets 2021.9.21 pyhd8ed1ab_0 conda-forge python 3.10.4 h8b4d769_0_cpython conda-forge python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge python-fastjsonschema 2.15.3 pyhd8ed1ab_0 conda-forge python_abi 3.10 2_cp310 conda-forge pytz 2022.1 pyhd8ed1ab_0 conda-forge pyyaml 6.0 py310h1961e1f_4 conda-forge pyzmq 23.0.0 py310h85fb675_0 conda-forge readline 8.1 h05e3726_0 conda-forge requests 2.27.1 pyhd8ed1ab_0 conda-forge scipy 1.8.1 py310h1f9c157_0 conda-forge send2trash 1.8.0 pyhd8ed1ab_0 conda-forge setuptools 62.3.2 py310h2ec42d9_0 conda-forge shapely 1.8.2 py310h6d09efd_1 conda-forge shellingham 1.4.0 pyh44b312d_0 conda-forge six 1.16.0 pyh6c4a22f_0 conda-forge smmap 3.0.5 pyh44b312d_0 conda-forge sniffio 1.2.0 py310h2ec42d9_3 conda-forge snowballstemmer 2.2.0 pyhd8ed1ab_0 conda-forge soupsieve 2.3.1 pyhd8ed1ab_0 conda-forge sphinx 4.5.0 pyh6c4a22f_0 conda-forge sphinx-book-theme 0.1.10 pyhd8ed1ab_1 conda-forge sphinx-comments 0.0.3 pyh9f0ad1d_0 conda-forge sphinx-copybutton 0.5.0 pyhd8ed1ab_0 conda-forge sphinx-external-toc 0.2.4 pyhd8ed1ab_0 conda-forge sphinx-jupyterbook-latex 0.4.6 pyhd8ed1ab_0 conda-forge sphinx-multitoc-numbering 0.1.3 pyhd8ed1ab_0 conda-forge sphinx-panels 0.6.0 pyhd8ed1ab_0 conda-forge sphinx-pythia-theme 2022.3.29 pypi_0 pypi sphinx-thebe 0.1.2 pyhd8ed1ab_0 conda-forge sphinx-togglebutton 0.3.1 pyhd8ed1ab_0 conda-forge sphinxcontrib-applehelp 1.0.2 py_0 conda-forge sphinxcontrib-bibtex 2.4.2 pyhd8ed1ab_0 conda-forge sphinxcontrib-devhelp 1.0.2 py_0 conda-forge sphinxcontrib-htmlhelp 2.0.0 pyhd8ed1ab_0 conda-forge sphinxcontrib-jsmath 1.0.1 py_0 conda-forge sphinxcontrib-qthelp 1.0.3 py_0 conda-forge sphinxcontrib-serializinghtml 1.1.5 pyhd8ed1ab_2 conda-forge sqlalchemy 1.3.24 py310h1961e1f_1 conda-forge sqlite 3.38.5 hd9f0692_0 conda-forge stack_data 0.2.0 pyhd8ed1ab_0 conda-forge svt-av1 1.1.0 hb486fe8_1 conda-forge terminado 0.15.0 py310h2ec42d9_0 conda-forge tinycss2 1.1.1 pyhd8ed1ab_0 conda-forge tk 8.6.12 h5dbffcc_0 conda-forge toml 0.10.2 pyhd8ed1ab_0 conda-forge tornado 6.1 py310h1961e1f_3 conda-forge traitlets 5.2.1.post0 pyhd8ed1ab_0 conda-forge typing_extensions 4.2.0 pyha770c72_1 conda-forge tzdata 2022a h191b570_0 conda-forge uc-micro-py 1.0.1 pyhd8ed1ab_0 conda-forge ukkonen 1.0.1 py310h6be76da_2 conda-forge unicodedata2 14.0.0 py310h1961e1f_1 conda-forge urllib3 1.26.9 pyhd8ed1ab_0 conda-forge virtualenv 20.14.1 py310h2ec42d9_0 conda-forge wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge webencodings 0.5.1 py_1 conda-forge websocket-client 1.3.2 pyhd8ed1ab_0 conda-forge wheel 0.37.1 pyhd8ed1ab_0 conda-forge widgetsnbextension 3.6.0 py310h2ec42d9_0 conda-forge x264 1!161.3030 h0d85af4_1 conda-forge x265 3.5 hbb4e6a2_3 conda-forge xarray 2022.3.0 pyhd8ed1ab_0 conda-forge xorg-libxau 1.0.9 h35c211d_0 conda-forge xorg-libxdmcp 1.1.3 h35c211d_0 conda-forge xz 5.2.5 haf1e3a3_1 conda-forge yaml 0.2.5 h0d85af4_2 conda-forge zeromq 4.3.4 he49afe7_1 conda-forge zipp 3.8.0 pyhd8ed1ab_0 conda-forge zlib 1.2.11 h6c3fc93_1014 conda-forge zstd 1.5.2 ha9df2e0_1 conda-forge

brian-rose commented 2 years ago

@ProjectPythia/infrastructure anyone have an idea what's going on here? pythia-datasets is in the conda environment, but from pythia_datasets import DATASETS raising a ModuleNotFoundError

ktyle commented 2 years ago

@williamnicewonger what OS are you running?

@brian-rose , while I was able to build the environment which installed python 3.10.4 (Linux amd64) and after activating, could run the import without error, I noticed a couple curiosities:

  1. The conda solve took significantly longer than it has in the past
  2. Likely related to (1), several packages in the environment (e.g., cartopy, matplotlib) were pulled from Pypi instead of conda-forge

I then built an environment with python<3.10 (3.9.13 in this case). The pythia-datasets import worked as well, and the two issues noted above with 3.10.4 did not occur.

williamnicewonger commented 2 years ago

@ktyle I am running macOS Monterey version 12.4

ktyle commented 2 years ago

Hmmm on my M1 Mac (also 12.4), the environment built properly and I was able to import pythia_datasets without error.

dcamron commented 2 years ago

@williamnicewonger Looks like you're using Anaconda Navigator to launch Jupyter? If so, make sure you're running Jupyter from within the activated environment you listed above, and not from the base environment in the Navigator. From the terminal:

conda activate pythia-book-dev
conda info
jupyter lab

then try from pythia_datasets import DATASETS from within that Jupyter Lab instance. If that still doesn't work, please provide us with the output of conda info above (feel free to modify directory names, etc. if preferred.)

You can also switch environments from within the Navigator if needed, though I'd need to brush up on where exactly that's done.

Unrelated, @ktyle I did not run into the same environment resolution issues you described with conda or mamba on osx-arm64. I haven't tried on rosetta osx-64 yet.

williamnicewonger commented 2 years ago

Wow.. I feel silly now. Thank you so much @dcamron! That was the issue. Thank you @ktyle @brian-rose and @Cescoooo as well for the support. I'll continue on with my foundations courses. Thanks project pythia for offering these!