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ProtProtocols / IsoProt

Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering
https://protprotocols.github.io
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Define or create useful example data #17

Closed veitveit closed 6 years ago

veitveit commented 6 years ago

Problem: Data with sufficient quantifiable peptides leads to database search taking too long (> 5min)

Possible solution: Reduce mgf-file to contain only spectra that were quantified

veitveit commented 6 years ago

The plan is to take iTRAQ data from http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0137048 and cut it down.