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ProtProtocols / IsoProt

Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering
https://protprotocols.github.io
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Add warning if multiple MGF files are found #27

Closed jgriss closed 6 years ago

jgriss commented 6 years ago

In case that multiple MGF files are present in the input directory, the user should be prompted about how these are handled.

In the current workflow, these should be treated as different fractions of the same sample.

In future workflows, the user could be prompted to choose what these files represent.

veitveit commented 6 years ago

@jgriss Do we still need that? It is very common to have multiple files for the same run. If we make clear that different MS runs need to be arranged in different folders, then we don't need to have a warning here

jgriss commented 6 years ago

This is now obsolete due to #4