search

ProtProtocols / IsoProt

Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering
https://protprotocols.github.io
11 stars 4 forks source link

Save parameters in json file and load them in R again #48

Closed veitveit closed 6 years ago

veitveit commented 6 years ago

This becomes more and more important when testing the protocol. Save the json file in the OUT folder so it always can be found.

By having all parameters saved instead of having them only defined as variable crucially helps when wanting to continue the analysis after the database search, especially when the notebook has been closed.

veitveit commented 6 years ago

This is related to #36 and #47

veitveit commented 6 years ago

The parameters are now saved when pressing the "Database search" button.

BUT: I did not manage to write the file into the OUT folder, so this needs correction.

We also need to have the output from the database search written into json

jgriss commented 6 years ago

As far as I understand, this issue describes the following steps:

  1. Save configuration (this currently doesn't work)
  2. Load configuration if the output already exists to be able to resume a project / analysis