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ProtProtocols / IsoProt

Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering
https://protprotocols.github.io
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wrong estimation of free memory #64

Closed veitveit closed 6 years ago

veitveit commented 6 years ago

The _freemem option underestimates the available memory.

E.g. we had 8 GB and it assigned about 2GB or less.

Could be a Docker issue.

jgriss commented 6 years ago

@veitveit What OS was docker running on?

veitveit commented 6 years ago

In the docker toolbox, maybe the default memory of the VirtualBox is too low?

jgriss commented 6 years ago

Hi @veitveit I now double checked: On windows (windows 10 with "native" docker and docker toolbox as well) docker is run in a virtual (linux) machine. Therefore, the memory settings of that machine are what we see in our docker setting.

I will double check how these settings can be adapted in the toolbox setup

veitveit commented 6 years ago

@jgriss This page might be useful: https://blog.pavelsklenar.com/5-useful-docker-tip-and-tricks-on-windows/