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ProtProtocols / IsoProt

Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering
https://protprotocols.github.io
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Loading previous data triggers error in R scripts #70

Closed veitveit closed 6 years ago

veitveit commented 6 years ago

Some configuration was not read correctely:

"Error in qnt[[i]] : subscript out of bounds"

veitveit commented 6 years ago

@jgriss

I might need your help here. This happens because the "mgf.filtered" files are not anymore there when reopening the Docker image.

It might help to copy all manipulated versions of the mgf input files to the OUT folder. Is that feasible?

jgriss commented 6 years ago

@veitveit The .fitlered MGF files are now written to the OUT directory. Respective R code in the notebook is updated. Please test if it works for your cases.

veitveit commented 6 years ago

Seems to work, great!