Open veitveit opened 5 years ago
jgriss
commented
5 years ago @veitveit We might be able to achieve this using papermill
The command line parameters could simply point to the config file and the python code then detects whether the parameters were set and executes the search right away.
veitveit
commented
5 years ago Yes, that sounds like a perfect solution.
On top of that, we will need to add an option for the number of threads. This could, to keep things simple, only happen on the command line.
Am Mi., 26. Sep. 2018 um 12:34 Uhr schrieb Johannes Griss < notifications@github.com>:
@veitveit https://github.com/veitveit We might be able to achieve this using papermill https://github.com/nteract/papermill
The command line parameters could simply point to the config file and the python code then detects whether the parameters were set and executes the search right away.
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Given one has all input files and parameter files, run the entire analysis.
This is related to #13 as a successful run of the example workflow would mean a healthy docker image.