Re-opening a workbook causes very high load

ProtProtocols / IsoProt

Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering

https://protprotocols.github.io

11 stars 4 forks source link

Re-opening a workbook causes very high load #79

Closed jgriss closed 5 years ago

jgriss commented 5 years ago

When re-opening the workbook of the spiked dataset, the Python Kernel started at 100% load and took very long.

This might be caused by the way we "inject" our code into the Notebook. It could, for example, be, that the injected JavaScript code that we use to execute subsequent cells is re-executed when loading the notebook.

jgriss commented 5 years ago

I am able to reproduce this issue with a simple notebook that only contains a cell displaying out "execute next cell" button. Depending on when you close the notebook, cells get re-executed when reopening the notebook.

Current ideas:

Delete the inserted Javascript as soon as the button has been clicked (need to figure out how this is done in Jupyter)
Test if there are alternative methods to trigger the execution of cells in a Jupyter notebook

jgriss commented 5 years ago

This issue should be fixed with the new button (bd8cd9ff3bd530cf8999e37c9067d7ed2b88ece4)