I use msconvert as a part of the OpenMS package and noticed that when I use --simAsSpectra and/or --srmAsSpectra options for command line tool, spectra output are different than the ones that msconvertGUI generates (please find print screens for comparison attached).
I could not figure out what version of msconvert OpenMS uses but wanted to double check with you if the latest version has the same issue. Thank you.
Hi,
I use msconvert as a part of the OpenMS package and noticed that when I use --simAsSpectra and/or --srmAsSpectra options for command line tool, spectra output are different than the ones that msconvertGUI generates (please find print screens for comparison attached).
I could not figure out what version of msconvert OpenMS uses but wanted to double check with you if the latest version has the same issue. Thank you.
N.B. TICs seem to look different as well.