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ProteoWizard
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pwiz
The ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis software.
http://proteowizard.sourceforge.net/
Apache License 2.0
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Could not automatically backport #3113
#3133
github-actions[bot]
opened
1 month ago
0
Fixes to the Relative Abundance graph formatting
#3132
rita-gwen
closed
3 weeks ago
0
AutoQC Loader updates
#3131
vagisha
closed
3 weeks ago
1
AutoQC Loader updates
#3130
vagisha
closed
1 month ago
0
Extend the transition list reader from importing just per-transition Notes to also reading per-precursor and per-molecule notes.
#3129
bspratt
closed
1 month ago
1
Prompt user to configure Koina before EncyclopeDIA search
#3128
nickshulman
closed
1 month ago
2
Error converting .wiff2 format to .mzML format
#3127
renkedawei
opened
1 month ago
2
Delete precursor isotopes when switching to low resolution
#3126
nickshulman
closed
1 month ago
0
Global spectrum filters
#3125
nickshulman
closed
1 month ago
0
- fixed crash after viewing treeview popup in SeeMS
#3124
chambm
closed
1 month ago
0
Alphapeptdeep Integration
#3123
xgwang-uw
opened
1 month ago
4
Skip over zoom scans when extracting chromatograms
#3122
nickshulman
closed
1 month ago
4
Add test for "File > Share" with international characters in file name
#3121
nickshulman
closed
1 month ago
0
Add a convenience function GetUIValue() for getting a value on the UI thread.
#3120
bspratt
closed
1 month ago
1
Edit > Integration > Peak Imputation menu item
#3119
nickshulman
opened
1 month ago
2
Replace uses of Trace.Trace* with new wrapper methods
#3118
bspratt
opened
1 month ago
16
Set the option to use UTF8 to encode filenames in sky.zip files
#3117
vagisha
closed
1 month ago
2
Fix a problem in Settings>Transitions>IonMobility where Skyline would hang if user tried to "Edit current" when there is no current IMSDB… (#3092)
#3116
nickshulman
closed
1 month ago
1
- added isolationWindows and isolationWidth spectrum list filters
#3115
chambm
closed
1 month ago
0
Fix unhandled error when score type is "Pecan_ELIB conversion" (#3112)
#3114
github-actions[bot]
closed
1 month ago
0
Skyline MSFragger DIA search and tutorial
#3113
chambm
closed
1 month ago
5
Fix unhandled error when score type is "Pecan_ELIB conversion"
#3112
nickshulman
closed
1 month ago
0
Remove code for ignoring ambiguous spectra from MSFReader.cpp
#3111
nickshulman
opened
1 month ago
4
Improve RT alignment in feature finding by using only the middle 60% of each replicate…
#3110
bspratt
closed
1 month ago
0
backport improvements to feature detection's RT alignment, for improved detection of features appearing in multiple replicates
#3109
bspratt
closed
1 month ago
2
Skyline: Make sure MultiFileLoader inside ChromatogramManager gets…
#3108
brendanx67
closed
1 month ago
0
More graceful handling of libraries containing nonsensical entries (e.g. water loss on molecule containing no oxygen atoms)
#3107
bspratt
opened
2 months ago
6
properly fix unwanted execution order dependency in parallel feature detection
#3106
bspratt
closed
2 months ago
0
Imzml
#3105
kpnovoselov
closed
2 months ago
1
Prompt to save the document when .skyd file has extra results
#3104
nickshulman
closed
5 days ago
1
Update the "ResourcesOrganizer" tool to work with HTML files
#3103
nickshulman
closed
2 weeks ago
2
In parallelized feature finding, the order in which Hardklor/Bullseye jobs complete is unpredictable and this led to some test failures.
#3102
bspratt
closed
2 months ago
0
Make Precursor Collision Energy nullable in the Document Grid
#3101
nickshulman
closed
2 months ago
0
Fix an issue where editing a molecule's formula or mass in the Targets tree would not update the m/z values for non-auto-managed precursor transitions
#3100
bspratt
closed
2 months ago
3
Fix slow tooltip on Targets tree if peptide has thousands of residues (Issue 925)
#3099
nickshulman
closed
2 months ago
0
Update the HTML version of the MS1 DDA Search tutorial
#3098
nickshulman
closed
2 months ago
2
Migrate all tutorials to Html
#3097
eduardo-proteinms
closed
3 weeks ago
8
fix https://skyline.ms/issues/home/issues/details.view?issueId=985 Target tree's Find function results window says "Peptide" where it should say "Molecule"
#3096
bspratt
closed
2 months ago
1
Figures of merit using bilinear fit and bootstrap calibration curves
#3095
nickshulman
closed
1 month ago
6
Additional use of a resource string leads to moving it from Resources to ModelResources
#3094
bspratt
closed
2 months ago
0
small molecule transition list reader wasn't recognizing the localized version of "library intensity" column header
#3093
bspratt
closed
2 months ago
0
Fix a problem in Settings>Transitions>IonMobility where Skyline would hang if user tried to "Edit current" when there is no current IMSDB…
#3092
bspratt
closed
2 months ago
2
Fix error importing zero-length SRM chromatograms
#3091
nickshulman
closed
2 months ago
0
* parallelized CreateLibraryFromSpectra
#3090
chambm
closed
1 month ago
8
Fix peak areas when times are not evenly spaced
#3089
nickshulman
closed
1 month ago
0
Move all grid items into "View > Live Reports" sub-menu
#3088
nickshulman
closed
1 month ago
0
Read CID/EAD mode from wiff2 files
#3087
david-cox-sciex
closed
2 months ago
15
Automatic cherry pick of #3084 from master to Skyline/skyline_24_1
#3086
github-actions[bot]
closed
2 months ago
0
* re-enabled TestDdaSearchMsFraggerBadFasta
#3085
chambm
closed
1 month ago
4
Skyline: Update perf tutorial audit logs to match translated text
#3084
brendanx67
closed
2 months ago
0
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