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Proteobench / ProteoBench

ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to allow a continuous, easy, and controlled comparison of proteomics data analysis workflows.
https://proteobench.readthedocs.io
Apache License 2.0
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Refactoring of Modules - Modularise and move into packages #269

Closed wolski closed 2 months ago

wolski commented 3 months ago

Parsing of identification and quant data (still in module -> move to parsing) Reading parsing configurations (merge with parsing)

Computing benchmarking scores (e.g. diff from expected fold change, CV, ROC curves, etc). Move this code out of the module into packages

proteobench/io/params proteobench/io/quant_data

proteobench/github proteobench/benchscoresscoring

wolski commented 2 months ago

closing, addressed with pull request #272