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Proteobench / ProteoBench

ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to allow a continuous, easy, and controlled comparison of proteomics data analysis workflows.
https://proteobench.readthedocs.io
Apache License 2.0
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:art::fire: Remove msfragger .params as dependency for FragPipe #287

Closed enryH closed 1 month ago

enryH commented 2 months ago

As pointed out by Witold, FragPipe configuration file contains all necessary information. (MsFragger .params is derived from .workflow file)

enryH commented 2 months ago

Can I have your parameter file @brvpuyve for testing. Did you already submit your dataset? otherwise I could it for testing.

brvpuyve commented 2 months ago

Hi @enryH,

When I tried to submit the MSFragger output it was using the public server. I think my submission was not accepted yet, since I do not see any MSFragger output.

The worfklow file: fragpipe.zip

Please let me know if you need support!