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Proteogenomics / trackhub-creator

Trackhub creation tool
Apache License 2.0
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Generate the Mapping to ENSEMBL using 1 and 2 gaps in Pogo #7

Open ypriverol opened 6 years ago

ypriverol commented 6 years ago

The current pipeline generates only the exact match between the peptides and the ENSEMBL coordinates. However, it would be important for the end users to have the possibility to see the match allowing 1 or 2 gaps during the mapping. This parameter in Pogo is -mm NUM. For this reason, we need to update the pogo code that generates in the name the number of mismatches.

ypriverol commented 6 years ago

The current pogo version supports the output of gaps 1 and 2. We should generate the files with those gaps for all projects and cluster.

mbdebian commented 6 years ago

We'll talk about this when the first iteration of the application and its integration on the pipeline is completed