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Proteomicslab57357 / UniprotR

Retrieving Information of Proteins from Uniprot
GNU General Public License v3.0
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Timeout when connecting to uniprot.org #17

Closed sarahgraff closed 2 years ago

sarahgraff commented 2 years ago

I'm running a script that uses the following UniprotR functions: image (uniacc is a list of accession numbers) Most of these fail due to a timeout error, but some successfully return the expected data. The successful returns are the not the same with every run of this script. Example error and output: image I have a good internet connection. Taking one of the accession numbers from the list and recreating the GET(url) is successful at loading the relevant .xml file in my browser.

MohmedSoudy commented 2 years ago

Would you share your accessions input with us please?

sarahgraff commented 2 years ago

This is the list of unique inputs. accession_numbers.txt

fisherman2019 commented 2 years ago

meet the same issue with GetProteinFunction(uniprotID, directorypath = NULL) GetProteinGOInfo(uniprotID, directorypath = outputDir) .... due to the web update?

MohmedSoudy commented 2 years ago

Dears @sarahgraff and @fisherman2019 Thank you for your interest in using our package. We update the package to resolve your problem and a new version UniprotR 2.2.1 is on its way to CRAN.