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Proteomicslab57357 / UniprotR

Retrieving Information of Proteins from Uniprot
GNU General Public License v3.0
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Organsim name for Pathway.Enr #19

Closed davidlilek closed 2 years ago

davidlilek commented 2 years ago

I'm working with data from Tribolium castaneum. Everything went fine with the analysis using UniprotR.

But Pathway.Enr failed due to a error in the organism name.

Tried it this way... Pathway.Enr(Accessions, OS="tcastaneum")

But it didn't work. Or did this function only work for mouse and humean?

Hope you have any ideas.

Thanks David

MohmedSoudy commented 2 years ago

Hi @davidlilek. Thank you for your interest in Our Package. Could you share the accession list so we can track the problem easier?

davidlilek commented 2 years ago

fasta.csv

Sorry for the delay ;-) Encl. the accesion list I used...

MohmedSoudy commented 2 years ago

Hi @davidlilek Sorry for the late reply here is the working code using UniprotR version 2.2.1

library(UniprotR)
data <- read.csv(file.choose(), header = F)
Enr <- Pathway.Enr(data$V1, OS="tcastaneum")
davidlilek commented 2 years ago

Thanks a lot. Don't know why it didn't work at the first try... But now everything fine and it works...