search

Przemol / seqplots

:chart_with_upwards_trend:SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps.
http://przemol.github.io/seqplots
86 stars 25 forks source link

Error in getREF #61

Open u-n-i-v-e-r-z opened 3 years ago

u-n-i-v-e-r-z commented 3 years ago

Hi there,

There has been changes in BSgenome library. getREF function no longer works even if genomes are indeed available.

The issue comes from this line :

BSgenome::installed.genomes(splitNameParts=TRUE)$provider_version

That should now be :

BSgenome::installed.genomes(splitNameParts=TRUE)$genome

Best

RobTesf commented 1 year ago

I keep getting the same error with the latest version. It would be nice to have this line fixed with the suggestion. line 93 of helper_functions.R

        GENOMES <- BSgenome::installed.genomes(
            splitNameParts=TRUE)$provider_version

thanks