SquigglePull command does not print help

splaisan commented 4 years ago

seems to have installed, finally. Apparently python 7 does not like mlpy and python 3.6 on ly can install with pip and not with conda (sad as I do not like to pip too much.

What does SquigglePull.py do (a dry run does not give me much info, is this normal?)

/opt/biotools/miniconda3/envs/base3.6/bin/python /opt/biotools/SquiggleKit/SquigglePull.py -h
  File "/opt/biotools/SquiggleKit/SquigglePull.py", line 139
    print '{}\t{}\t{}\t{}\t{}'.format(
                             ^
SyntaxError: invalid syntax

a real command also fails

/opt/biotools/miniconda3/envs/base3.6/bin/python /opt/biotools/SquiggleKit/SquigglePull.py reads/0/ -f all > test.tsv
  File "/opt/biotools/SquiggleKit/SquigglePull.py", line 139
    print '{}\t{}\t{}\t{}\t{}'.format(
                             ^
SyntaxError: invalid syntax

other commands show help on dry run or --help

Psy-Fer commented 4 years ago

Hello.

Sorry, i've been away for the last week. I'll get back to you as soon as i've cleared off some urgent matters now i'm back at work.

Talk soon. James

Psy-Fer commented 4 years ago

Hi,

So the issue here, is I have yet to upgrade SquigglePull to work with python3. That print statement wont work in python3.

It's coming in the next update. Sorry for the current inconvenience.

splaisan commented 4 years ago

OK, I'll try to progress on other fronts meanwhile. thanks for the nice tools

Psy-Fer / SquiggleKit

SquigglePull command does not print help #22