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Psy-Fer / buttery-eel

The buttery eel - a slow5 guppy/dorado basecaller wrapper
MIT License
34 stars 2 forks source link

samples per second output #58

Open Psy-Fer opened 3 days ago

Psy-Fer commented 3 days ago

When done, post the samples per second for the basecalling

Start the timer in the buttery-eel.py part before basecalling grab the signal_len values and add them to a running tally for each client push the values somewhere to be added together end once it comes out calculate samples per second taking the time and total samples

or something like that. Might help with getting an idea on speed between models as well as comparing to existing ONT samples/s outputs

hanyishui0612 commented 3 days ago

Hi, Thank you for your good job!Can you tell me how to start the timer in the buttery-eel.py part .

Psy-Fer commented 3 days ago

Hey,

This is an issue to track a new feature that I have yet to implement. Once it's implemented, tested, and pushed into new release, it will be on by default.

James