If you are doing analysis on a run with 96 samples, medaka should work fine, but nanopolish might throw an error about too many arguments in the celery.log file.
A quick fix for this is to split the sample csv file into 2, with 45 samples in each.
Then submit the job twice with a unique job name and output folder for each, and the corresponding half sample .csv file.
A fix will be made to get around this limitation soon.
If you are doing analysis on a run with 96 samples, medaka should work fine, but nanopolish might throw an error about too many arguments in the celery.log file.
A quick fix for this is to split the sample csv file into 2, with 45 samples in each. Then submit the job twice with a unique job name and output folder for each, and the corresponding half sample .csv file.
A fix will be made to get around this limitation soon.