Produce a report that summarizes Pass/Fail for each QC check for each sample

Public-Health-Bioinformatics / cpo-pipeline

An analysis pipeline for the purpose of investigating Carbapenemase-Producing Organisms.

MIT License

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Produce a report that summarizes Pass/Fail for each QC check for each sample #11

Open dfornika opened 5 years ago

dfornika commented 5 years ago

We'd like to be able to determine at a glance if any samples failed QC checkpoints in the pipeline.

Produce a summary file that reports Pass/Fail status for each sample, for each QC checkpoint. The summary file can then be loaded into some sort of grid view that will be easy to identify QC failures for a full multi-sample run.

bfjia commented 5 years ago

PASS/FAIL flags added for pre-assembly QC module, stored in dictionary 'qc_verdicts' in commit https://github.com/Public-Health-Bioinformatics/cpo-pipeline/commit/48cf43bf875b0c77eb9718a1474945d7558da645