check for external program completion

Public-Health-Bioinformatics / cpo-pipeline

An analysis pipeline for the purpose of investigating Carbapenemase-Producing Organisms.

MIT License

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Closed bfjia closed 5 years ago

bfjia commented 5 years ago

check for existence of output from external programs before trying to parse the results
moved all the file paths into a dictionary for organization

bfjia commented 5 years ago

2 new parsers is added for parsing file 'totalbp' and '$reference_genomeStats.txt' used for calculating coverage

dfornika commented 5 years ago

Thanks Justin @imasianxd !