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Public-Health-Bioinformatics / cpo-pipeline

An analysis pipeline for the purpose of investigating Carbapenemase-Producing Organisms.
MIT License
1 stars 2 forks source link

Merge pipelines #32

Closed dfornika closed 5 years ago

dfornika commented 5 years ago

Enable end-to-end analysis (assembly + Quality Control, typing (MLST & plasmid incompatibility group), resistance gene identification) in a single command.

Enable multiple-sample analysis in a single command.