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Public-Health-Bioinformatics / cpo-pipeline

An analysis pipeline for the purpose of investigating Carbapenemase-Producing Organisms.
MIT License
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Collect Relevant Outputs #35

Closed dfornika closed 5 years ago

dfornika commented 5 years ago

Produce an output file with the following fields:

total_bp
estimated_genome_size
estimated_depth_of_coverage
mash_best_hit
mlst_scheme
mlst_sequence_type
mlst_allele_1
mlst_allele_2
mlst_allele_3
mlst_allele_4
mlst_allele_5
mlst_allele_6
mlst_allele_7