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Public-Health-Bioinformatics / cpo-pipeline

An analysis pipeline for the purpose of investigating Carbapenemase-Producing Organisms.
MIT License
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Plasmid Analysis #37

Open dfornika opened 5 years ago

dfornika commented 5 years ago

Settle on an analysis plan for plasmid data. Report:

PLASMID_FAMILY
PLASMID_BEST_MATCH
PLASMID_COVERAGE
PLASMID_SNVS_TO_BEST_MATCH
PLASMID_CARBAPENEMASE
PLASMID_INC_GROUP
ddooley commented 5 years ago

Starting to look like some fields we need in GenEpiO!

wwhsiao commented 5 years ago

I think we should coordinate this effort with John Nash’s group re: MobSuite.

Cheers,

Will

William Hsiao, PhD Senior Scientist, BCCDC Public Health Laboratory Clinical Assistant Professor, Pathology & Laboratory Medicine, UBC Adjunct Professor, Molecular Biology and Biochemistry, SFU Rm 4066, 655 West 12th Avenue Vancouver, BC, V5Z 4R4 Canada Tel: 604-707-2561 Fax: 604-707-2603 On Jan 29, 2019, 9:45 AM -0800, Damion Dooley notifications@github.com, wrote:

Starting to look like some fields we need in GenEpiO! — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub, or mute the thread.