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Public-Health-Scotland / source-linkage-files

This repo is for the syntax used for the PHS Source Linkage File project
https://public-health-scotland.github.io/source-linkage-files/
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review deaths dates processing #987

Closed Jennit07 closed 3 months ago

Jennit07 commented 4 months ago

Opening this as a draft PR for now to fix #986

Previously, the IT deaths extract was using the nrs weekly date but if this was missing, it would use the chi death date. We agreed as a team that this was wrong and the boxi nrs deaths date was the most reliable. This was the previous code in process_it_chi_deaths:

death_date = dplyr::coalesce(.data$death_date_nrs, .data$death_date_chi)

I have removed this and selected chi and death_date_chi so that we do not use the weekly nrs death date provided by IT. This is unvalidated and found to be unreliable. Instead, the IT chi death date is left with no modification and has two variables: chi and death_date_chi.

Later in the process we create a deaths lookup which is one row per chi for deaths that occurred within the financial year. This is used to match onto the episode file later in the process. By default, this was set up to use the boxi nrs death date which is submitted monthly and is validated. We agreed this should be the correct method going forward. However, this does not take into account the chi date. I have updated this in a way that:

if the BOXI NRS date does not match the chi death date, use the chi death date here is the code which does this: 

    dplyr::mutate(
      death_date = dplyr::if_else(.data$record_keydate1 != .data$death_date_chi,
        .data$death_date_chi, .data$record_keydate1
      ),
      deceased = TRUE,
      .keep = "unused"
    )

When i checked this with 1920 data, there was only one case which changed from 31-03-2020 to 01-04-2020. This was not one of the chi's which had a 40year difference. The 40 year difference mainly was in the weekly nrs data.

We possibly need to review this to say use the chi date if X time between the boxi nrs date and chi date

Another thing to check the methodology is on care home data which is explicitly using the nrs weekly data but if this is not available then use chi data. This is outstanding on this PR. The changes should be the same from the deaths lookup

TO DO:

opening a draft for now to see the changes.

github-actions[bot] commented 4 months ago

@check-spelling-bot Report

:red_circle: Please review

See the :open_file_folder: files view, the :scroll:action log, or :memo: job summary for details.

Unrecognized words (12) ``` ADPE Canx CCYY CNWs Comhairle communicty LCHO Matern Mcbride PPAs rbindlist SMRA ```
Previously acknowledged words that are now absent adpe canx ccyy cnws comhairle lcho matern mcbride ppas returnsthe smra 🫥
To accept these unrecognized words as correct and remove the previously acknowledged and now absent words, you could run the following commands ... in a clone of the [git@github.com:Public-Health-Scotland/source-linkage-files.git](https://github.com/Public-Health-Scotland/source-linkage-files.git) repository on the `it_deaths` branch ([:information_source: how do I use this?]( https://github.com/check-spelling/check-spelling/wiki/Accepting-Suggestions)): ``` sh curl -s -S -L 'https://raw.githubusercontent.com/check-spelling/check-spelling/main/apply.pl' | perl - 'https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10143477663/attempts/1' ```

OR

To have the bot accept them for you, reply quoting the following line: @check-spelling-bot apply updates.

Available :books: dictionaries could cover words (expected and unrecognized) not in the :blue_book: dictionary This includes both **expected items** (307) from .github/actions/spelling/expect.txt and **unrecognized words** (12) Dictionary | Entries | Covers | Uniquely -|-|-|- [cspell:fullstack/dict/fullstack.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/fullstack/dict/fullstack.txt)|419|3|3| [cspell:k8s/dict/k8s.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/k8s/dict/k8s.txt)|153|4|1| [cspell:php/dict/php.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/php/dict/php.txt)|1689|4|| [cspell:node/dict/node.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/node/dict/node.txt)|891|3|1| [cspell:npm/dict/npm.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/npm/dict/npm.txt)|302|3|| Consider adding them (in `.github/workflows/spelling.yml`) for `uses: check-spelling/check-spelling@main` in its `with`: ``` yml with: extra_dictionaries: cspell:fullstack/dict/fullstack.txt cspell:k8s/dict/k8s.txt cspell:php/dict/php.txt cspell:node/dict/node.txt cspell:npm/dict/npm.txt ``` To stop checking additional dictionaries, add (in `.github/workflows/spelling.yml`) for `uses: check-spelling/check-spelling@main` in its `with`: ``` yml check_extra_dictionaries: '' ```
Errors (1) See the [:open_file_folder: files](https://github.com/Public-Health-Scotland/source-linkage-files/pull/987/files/) view, the [:scroll:action log](https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10143477663/job/28044918262#step:4:1), or [:memo: job summary](https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10143477663/attempts/1#summary-28044918262) for details. [:x: Errors](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions) | Count -|- [:x: ignored-expect-variant](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions#ignored-expect-variant) | 3 See [:x: Event descriptions](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions) for more information.
If the flagged items are :exploding_head: false positives If items relate to a ... * binary file (or some other file you wouldn't want to check at all). Please add a file path to the `excludes.txt` file matching the containing file. File paths are Perl 5 Regular Expressions - you can [test]( https://www.regexplanet.com/advanced/perl/) yours before committing to verify it will match your files. `^` refers to the file's path from the root of the repository, so `^README\.md$` would exclude [README.md]( ../tree/HEAD/README.md) (on whichever branch you're using). * well-formed pattern. If you can write a [pattern](https://github.com/check-spelling/check-spelling/wiki/Configuration-Examples:-patterns) that would match it, try adding it to the `patterns.txt` file. Patterns are Perl 5 Regular Expressions - you can [test]( https://www.regexplanet.com/advanced/perl/) yours before committing to verify it will match your lines. Note that patterns can't match multiline strings.
github-actions[bot] commented 4 months ago

@check-spelling-bot Report

:red_circle: Please review

See the :open_file_folder: files view, the :scroll:action log, or :memo: job summary for details.

Unrecognized words (12) ``` ADPE Canx CCYY CNWs Comhairle communicty LCHO Matern Mcbride PPAs rbindlist SMRA ```
Previously acknowledged words that are now absent adpe canx ccyy cnws comhairle lcho matern mcbride ppas returnsthe smra 🫥
To accept these unrecognized words as correct and remove the previously acknowledged and now absent words, you could run the following commands ... in a clone of the [git@github.com:Public-Health-Scotland/source-linkage-files.git](https://github.com/Public-Health-Scotland/source-linkage-files.git) repository on the `it_deaths` branch ([:information_source: how do I use this?]( https://github.com/check-spelling/check-spelling/wiki/Accepting-Suggestions)): ``` sh curl -s -S -L 'https://raw.githubusercontent.com/check-spelling/check-spelling/main/apply.pl' | perl - 'https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10144805492/attempts/1' ```

OR

To have the bot accept them for you, reply quoting the following line: @check-spelling-bot apply updates.

Available :books: dictionaries could cover words (expected and unrecognized) not in the :blue_book: dictionary This includes both **expected items** (307) from .github/actions/spelling/expect.txt and **unrecognized words** (12) Dictionary | Entries | Covers | Uniquely -|-|-|- [cspell:fullstack/dict/fullstack.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/fullstack/dict/fullstack.txt)|419|3|3| [cspell:k8s/dict/k8s.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/k8s/dict/k8s.txt)|153|4|1| [cspell:php/dict/php.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/php/dict/php.txt)|1689|4|| [cspell:node/dict/node.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/node/dict/node.txt)|891|3|1| [cspell:npm/dict/npm.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/npm/dict/npm.txt)|302|3|| Consider adding them (in `.github/workflows/spelling.yml`) for `uses: check-spelling/check-spelling@main` in its `with`: ``` yml with: extra_dictionaries: cspell:fullstack/dict/fullstack.txt cspell:k8s/dict/k8s.txt cspell:php/dict/php.txt cspell:node/dict/node.txt cspell:npm/dict/npm.txt ``` To stop checking additional dictionaries, add (in `.github/workflows/spelling.yml`) for `uses: check-spelling/check-spelling@main` in its `with`: ``` yml check_extra_dictionaries: '' ```
Errors (1) See the [:open_file_folder: files](https://github.com/Public-Health-Scotland/source-linkage-files/pull/987/files/) view, the [:scroll:action log](https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10144805492/job/28049058104#step:4:1), or [:memo: job summary](https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10144805492/attempts/1#summary-28049058104) for details. [:x: Errors](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions) | Count -|- [:x: ignored-expect-variant](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions#ignored-expect-variant) | 3 See [:x: Event descriptions](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions) for more information.
If the flagged items are :exploding_head: false positives If items relate to a ... * binary file (or some other file you wouldn't want to check at all). Please add a file path to the `excludes.txt` file matching the containing file. File paths are Perl 5 Regular Expressions - you can [test]( https://www.regexplanet.com/advanced/perl/) yours before committing to verify it will match your files. `^` refers to the file's path from the root of the repository, so `^README\.md$` would exclude [README.md]( ../tree/HEAD/README.md) (on whichever branch you're using). * well-formed pattern. If you can write a [pattern](https://github.com/check-spelling/check-spelling/wiki/Configuration-Examples:-patterns) that would match it, try adding it to the `patterns.txt` file. Patterns are Perl 5 Regular Expressions - you can [test]( https://www.regexplanet.com/advanced/perl/) yours before committing to verify it will match your lines. Note that patterns can't match multiline strings.
github-actions[bot] commented 4 months ago

@check-spelling-bot Report

:red_circle: Please review

See the :open_file_folder: files view, the :scroll:action log, or :memo: job summary for details.

Unrecognized words (12) ``` ADPE Canx CCYY CNWs Comhairle communicty LCHO Matern Mcbride PPAs rbindlist SMRA ```
Previously acknowledged words that are now absent adpe canx ccyy cnws comhairle lcho matern mcbride ppas returnsthe smra 🫥
To accept these unrecognized words as correct and remove the previously acknowledged and now absent words, you could run the following commands ... in a clone of the [git@github.com:Public-Health-Scotland/source-linkage-files.git](https://github.com/Public-Health-Scotland/source-linkage-files.git) repository on the `it_deaths` branch ([:information_source: how do I use this?]( https://github.com/check-spelling/check-spelling/wiki/Accepting-Suggestions)): ``` sh curl -s -S -L 'https://raw.githubusercontent.com/check-spelling/check-spelling/main/apply.pl' | perl - 'https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10146156889/attempts/1' ```

OR

To have the bot accept them for you, reply quoting the following line: @check-spelling-bot apply updates.

Available :books: dictionaries could cover words (expected and unrecognized) not in the :blue_book: dictionary This includes both **expected items** (307) from .github/actions/spelling/expect.txt and **unrecognized words** (12) Dictionary | Entries | Covers | Uniquely -|-|-|- [cspell:fullstack/dict/fullstack.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/fullstack/dict/fullstack.txt)|419|3|3| [cspell:k8s/dict/k8s.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/k8s/dict/k8s.txt)|153|4|1| [cspell:php/dict/php.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/php/dict/php.txt)|1689|4|| [cspell:node/dict/node.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/node/dict/node.txt)|891|3|1| [cspell:npm/dict/npm.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/npm/dict/npm.txt)|302|3|| Consider adding them (in `.github/workflows/spelling.yml`) for `uses: check-spelling/check-spelling@main` in its `with`: ``` yml with: extra_dictionaries: cspell:fullstack/dict/fullstack.txt cspell:k8s/dict/k8s.txt cspell:php/dict/php.txt cspell:node/dict/node.txt cspell:npm/dict/npm.txt ``` To stop checking additional dictionaries, add (in `.github/workflows/spelling.yml`) for `uses: check-spelling/check-spelling@main` in its `with`: ``` yml check_extra_dictionaries: '' ```
Errors (1) See the [:open_file_folder: files](https://github.com/Public-Health-Scotland/source-linkage-files/pull/987/files/) view, the [:scroll:action log](https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10146156889/job/28053558420#step:4:1), or [:memo: job summary](https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10146156889/attempts/1#summary-28053558420) for details. [:x: Errors](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions) | Count -|- [:x: ignored-expect-variant](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions#ignored-expect-variant) | 3 See [:x: Event descriptions](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions) for more information.
If the flagged items are :exploding_head: false positives If items relate to a ... * binary file (or some other file you wouldn't want to check at all). Please add a file path to the `excludes.txt` file matching the containing file. File paths are Perl 5 Regular Expressions - you can [test]( https://www.regexplanet.com/advanced/perl/) yours before committing to verify it will match your files. `^` refers to the file's path from the root of the repository, so `^README\.md$` would exclude [README.md]( ../tree/HEAD/README.md) (on whichever branch you're using). * well-formed pattern. If you can write a [pattern](https://github.com/check-spelling/check-spelling/wiki/Configuration-Examples:-patterns) that would match it, try adding it to the `patterns.txt` file. Patterns are Perl 5 Regular Expressions - you can [test]( https://www.regexplanet.com/advanced/perl/) yours before committing to verify it will match your lines. Note that patterns can't match multiline strings.
github-actions[bot] commented 4 months ago

@check-spelling-bot Report

:red_circle: Please review

See the :open_file_folder: files view, the :scroll:action log, or :memo: job summary for details.

Unrecognized words (12) ``` ADPE Canx CCYY CNWs Comhairle communicty LCHO Matern Mcbride PPAs rbindlist SMRA ```
Previously acknowledged words that are now absent adpe canx ccyy cnws comhairle lcho matern mcbride ppas returnsthe smra 🫥
To accept these unrecognized words as correct and remove the previously acknowledged and now absent words, you could run the following commands ... in a clone of the [git@github.com:Public-Health-Scotland/source-linkage-files.git](https://github.com/Public-Health-Scotland/source-linkage-files.git) repository on the `it_deaths` branch ([:information_source: how do I use this?]( https://github.com/check-spelling/check-spelling/wiki/Accepting-Suggestions)): ``` sh curl -s -S -L 'https://raw.githubusercontent.com/check-spelling/check-spelling/main/apply.pl' | perl - 'https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10146314373/attempts/1' ```

OR

To have the bot accept them for you, reply quoting the following line: @check-spelling-bot apply updates.

Available :books: dictionaries could cover words (expected and unrecognized) not in the :blue_book: dictionary This includes both **expected items** (307) from .github/actions/spelling/expect.txt and **unrecognized words** (12) Dictionary | Entries | Covers | Uniquely -|-|-|- [cspell:fullstack/dict/fullstack.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/fullstack/dict/fullstack.txt)|419|3|3| [cspell:k8s/dict/k8s.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/k8s/dict/k8s.txt)|153|4|1| [cspell:php/dict/php.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/php/dict/php.txt)|1689|4|| [cspell:node/dict/node.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/node/dict/node.txt)|891|3|1| [cspell:npm/dict/npm.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/npm/dict/npm.txt)|302|3|| Consider adding them (in `.github/workflows/spelling.yml`) for `uses: check-spelling/check-spelling@main` in its `with`: ``` yml with: extra_dictionaries: cspell:fullstack/dict/fullstack.txt cspell:k8s/dict/k8s.txt cspell:php/dict/php.txt cspell:node/dict/node.txt cspell:npm/dict/npm.txt ``` To stop checking additional dictionaries, add (in `.github/workflows/spelling.yml`) for `uses: check-spelling/check-spelling@main` in its `with`: ``` yml check_extra_dictionaries: '' ```
Errors (1) See the [:open_file_folder: files](https://github.com/Public-Health-Scotland/source-linkage-files/pull/987/files/) view, the [:scroll:action log](https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10146314373/job/28054073821#step:4:1), or [:memo: job summary](https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10146314373/attempts/1#summary-28054073821) for details. [:x: Errors](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions) | Count -|- [:x: ignored-expect-variant](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions#ignored-expect-variant) | 3 See [:x: Event descriptions](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions) for more information.
If the flagged items are :exploding_head: false positives If items relate to a ... * binary file (or some other file you wouldn't want to check at all). Please add a file path to the `excludes.txt` file matching the containing file. File paths are Perl 5 Regular Expressions - you can [test]( https://www.regexplanet.com/advanced/perl/) yours before committing to verify it will match your files. `^` refers to the file's path from the root of the repository, so `^README\.md$` would exclude [README.md]( ../tree/HEAD/README.md) (on whichever branch you're using). * well-formed pattern. If you can write a [pattern](https://github.com/check-spelling/check-spelling/wiki/Configuration-Examples:-patterns) that would match it, try adding it to the `patterns.txt` file. Patterns are Perl 5 Regular Expressions - you can [test]( https://www.regexplanet.com/advanced/perl/) yours before committing to verify it will match your lines. Note that patterns can't match multiline strings.
github-actions[bot] commented 4 months ago

@check-spelling-bot Report

:red_circle: Please review

See the :open_file_folder: files view, the :scroll:action log, or :memo: job summary for details.

Unrecognized words (12) ``` ADPE Canx CCYY CNWs Comhairle communicty LCHO Matern Mcbride PPAs rbindlist SMRA ```
Previously acknowledged words that are now absent adpe canx ccyy cnws comhairle lcho matern mcbride ppas returnsthe smra 🫥
To accept these unrecognized words as correct and remove the previously acknowledged and now absent words, you could run the following commands ... in a clone of the [git@github.com:Public-Health-Scotland/source-linkage-files.git](https://github.com/Public-Health-Scotland/source-linkage-files.git) repository on the `it_deaths` branch ([:information_source: how do I use this?]( https://github.com/check-spelling/check-spelling/wiki/Accepting-Suggestions)): ``` sh curl -s -S -L 'https://raw.githubusercontent.com/check-spelling/check-spelling/main/apply.pl' | perl - 'https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10158897142/attempts/1' ```

OR

To have the bot accept them for you, reply quoting the following line: @check-spelling-bot apply updates.

Available :books: dictionaries could cover words (expected and unrecognized) not in the :blue_book: dictionary This includes both **expected items** (307) from .github/actions/spelling/expect.txt and **unrecognized words** (12) Dictionary | Entries | Covers | Uniquely -|-|-|- [cspell:fullstack/dict/fullstack.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/fullstack/dict/fullstack.txt)|419|3|3| [cspell:k8s/dict/k8s.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/k8s/dict/k8s.txt)|153|4|1| [cspell:php/dict/php.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/php/dict/php.txt)|1689|4|| [cspell:node/dict/node.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/node/dict/node.txt)|891|3|1| [cspell:npm/dict/npm.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/npm/dict/npm.txt)|302|3|| Consider adding them (in `.github/workflows/spelling.yml`) for `uses: check-spelling/check-spelling@main` in its `with`: ``` yml with: extra_dictionaries: cspell:fullstack/dict/fullstack.txt cspell:k8s/dict/k8s.txt cspell:php/dict/php.txt cspell:node/dict/node.txt cspell:npm/dict/npm.txt ``` To stop checking additional dictionaries, add (in `.github/workflows/spelling.yml`) for `uses: check-spelling/check-spelling@main` in its `with`: ``` yml check_extra_dictionaries: '' ```
Errors (1) See the [:open_file_folder: files](https://github.com/Public-Health-Scotland/source-linkage-files/pull/987/files/) view, the [:scroll:action log](https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10158897142/job/28091907714#step:4:1), or [:memo: job summary](https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10158897142/attempts/1#summary-28091907714) for details. [:x: Errors](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions) | Count -|- [:x: ignored-expect-variant](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions#ignored-expect-variant) | 3 See [:x: Event descriptions](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions) for more information.
If the flagged items are :exploding_head: false positives If items relate to a ... * binary file (or some other file you wouldn't want to check at all). Please add a file path to the `excludes.txt` file matching the containing file. File paths are Perl 5 Regular Expressions - you can [test]( https://www.regexplanet.com/advanced/perl/) yours before committing to verify it will match your files. `^` refers to the file's path from the root of the repository, so `^README\.md$` would exclude [README.md]( ../tree/HEAD/README.md) (on whichever branch you're using). * well-formed pattern. If you can write a [pattern](https://github.com/check-spelling/check-spelling/wiki/Configuration-Examples:-patterns) that would match it, try adding it to the `patterns.txt` file. Patterns are Perl 5 Regular Expressions - you can [test]( https://www.regexplanet.com/advanced/perl/) yours before committing to verify it will match your lines. Note that patterns can't match multiline strings.
github-actions[bot] commented 4 months ago

@check-spelling-bot Report

:red_circle: Please review

See the :open_file_folder: files view, the :scroll:action log, or :memo: job summary for details.

Unrecognized words (12) ``` ADPE Canx CCYY CNWs Comhairle communicty LCHO Matern Mcbride PPAs rbindlist SMRA ```
Previously acknowledged words that are now absent adpe canx ccyy cnws comhairle lcho matern mcbride ppas returnsthe smra 🫥
To accept these unrecognized words as correct and remove the previously acknowledged and now absent words, you could run the following commands ... in a clone of the [git@github.com:Public-Health-Scotland/source-linkage-files.git](https://github.com/Public-Health-Scotland/source-linkage-files.git) repository on the `it_deaths` branch ([:information_source: how do I use this?]( https://github.com/check-spelling/check-spelling/wiki/Accepting-Suggestions)): ``` sh curl -s -S -L 'https://raw.githubusercontent.com/check-spelling/check-spelling/main/apply.pl' | perl - 'https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10162533125/attempts/1' ```

OR

To have the bot accept them for you, reply quoting the following line: @check-spelling-bot apply updates.

Available :books: dictionaries could cover words (expected and unrecognized) not in the :blue_book: dictionary This includes both **expected items** (307) from .github/actions/spelling/expect.txt and **unrecognized words** (12) Dictionary | Entries | Covers | Uniquely -|-|-|- [cspell:fullstack/dict/fullstack.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/fullstack/dict/fullstack.txt)|419|3|3| [cspell:k8s/dict/k8s.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/k8s/dict/k8s.txt)|153|4|1| [cspell:php/dict/php.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/php/dict/php.txt)|1689|4|| [cspell:node/dict/node.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/node/dict/node.txt)|891|3|1| [cspell:npm/dict/npm.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/npm/dict/npm.txt)|302|3|| Consider adding them (in `.github/workflows/spelling.yml`) for `uses: check-spelling/check-spelling@main` in its `with`: ``` yml with: extra_dictionaries: cspell:fullstack/dict/fullstack.txt cspell:k8s/dict/k8s.txt cspell:php/dict/php.txt cspell:node/dict/node.txt cspell:npm/dict/npm.txt ``` To stop checking additional dictionaries, add (in `.github/workflows/spelling.yml`) for `uses: check-spelling/check-spelling@main` in its `with`: ``` yml check_extra_dictionaries: '' ```
Errors (1) See the [:open_file_folder: files](https://github.com/Public-Health-Scotland/source-linkage-files/pull/987/files/) view, the [:scroll:action log](https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10162533125/job/28103392940#step:4:1), or [:memo: job summary](https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10162533125/attempts/1#summary-28103392940) for details. [:x: Errors](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions) | Count -|- [:x: ignored-expect-variant](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions#ignored-expect-variant) | 3 See [:x: Event descriptions](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions) for more information.
If the flagged items are :exploding_head: false positives If items relate to a ... * binary file (or some other file you wouldn't want to check at all). Please add a file path to the `excludes.txt` file matching the containing file. File paths are Perl 5 Regular Expressions - you can [test]( https://www.regexplanet.com/advanced/perl/) yours before committing to verify it will match your files. `^` refers to the file's path from the root of the repository, so `^README\.md$` would exclude [README.md]( ../tree/HEAD/README.md) (on whichever branch you're using). * well-formed pattern. If you can write a [pattern](https://github.com/check-spelling/check-spelling/wiki/Configuration-Examples:-patterns) that would match it, try adding it to the `patterns.txt` file. Patterns are Perl 5 Regular Expressions - you can [test]( https://www.regexplanet.com/advanced/perl/) yours before committing to verify it will match your lines. Note that patterns can't match multiline strings.
github-actions[bot] commented 3 months ago

@check-spelling-bot Report

:red_circle: Please review

See the :open_file_folder: files view, the :scroll:action log, or :memo: job summary for details.

Unrecognized words (13) ``` ADPE anomymous Canx CCYY CNWs Comhairle communicty LCHO Matern Mcbride PPAs rbindlist SMRA ```
Previously acknowledged words that are now absent adpe canx ccyy cnws comhairle lcho matern mcbride ppas returnsthe smra 🫥
To accept these unrecognized words as correct and remove the previously acknowledged and now absent words, you could run the following commands ... in a clone of the [git@github.com:Public-Health-Scotland/source-linkage-files.git](https://github.com/Public-Health-Scotland/source-linkage-files.git) repository on the `it_deaths` branch ([:information_source: how do I use this?]( https://github.com/check-spelling/check-spelling/wiki/Accepting-Suggestions)): ``` sh curl -s -S -L 'https://raw.githubusercontent.com/check-spelling/check-spelling/main/apply.pl' | perl - 'https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10219305003/attempts/1' ```

OR

To have the bot accept them for you, reply quoting the following line: @check-spelling-bot apply updates.

Available :books: dictionaries could cover words (expected and unrecognized) not in the :blue_book: dictionary This includes both **expected items** (307) from .github/actions/spelling/expect.txt and **unrecognized words** (13) Dictionary | Entries | Covers | Uniquely -|-|-|- [cspell:fullstack/dict/fullstack.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/fullstack/dict/fullstack.txt)|419|3|3| [cspell:k8s/dict/k8s.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/k8s/dict/k8s.txt)|153|4|1| [cspell:php/dict/php.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/php/dict/php.txt)|1689|4|| [cspell:node/dict/node.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/node/dict/node.txt)|891|3|1| [cspell:npm/dict/npm.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/npm/dict/npm.txt)|302|3|| Consider adding them (in `.github/workflows/spelling.yml`) for `uses: check-spelling/check-spelling@main` in its `with`: ``` yml with: extra_dictionaries: cspell:fullstack/dict/fullstack.txt cspell:k8s/dict/k8s.txt cspell:php/dict/php.txt cspell:node/dict/node.txt cspell:npm/dict/npm.txt ``` To stop checking additional dictionaries, add (in `.github/workflows/spelling.yml`) for `uses: check-spelling/check-spelling@main` in its `with`: ``` yml check_extra_dictionaries: '' ```
Errors (1) See the [:open_file_folder: files](https://github.com/Public-Health-Scotland/source-linkage-files/pull/987/files/) view, the [:scroll:action log](https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10219305003/job/28277287719#step:4:1), or [:memo: job summary](https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10219305003/attempts/1#summary-28277287719) for details. [:x: Errors](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions) | Count -|- [:x: ignored-expect-variant](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions#ignored-expect-variant) | 3 See [:x: Event descriptions](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions) for more information.
If the flagged items are :exploding_head: false positives If items relate to a ... * binary file (or some other file you wouldn't want to check at all). Please add a file path to the `excludes.txt` file matching the containing file. File paths are Perl 5 Regular Expressions - you can [test]( https://www.regexplanet.com/advanced/perl/) yours before committing to verify it will match your files. `^` refers to the file's path from the root of the repository, so `^README\.md$` would exclude [README.md]( ../tree/HEAD/README.md) (on whichever branch you're using). * well-formed pattern. If you can write a [pattern](https://github.com/check-spelling/check-spelling/wiki/Configuration-Examples:-patterns) that would match it, try adding it to the `patterns.txt` file. Patterns are Perl 5 Regular Expressions - you can [test]( https://www.regexplanet.com/advanced/perl/) yours before committing to verify it will match your lines. Note that patterns can't match multiline strings.
github-actions[bot] commented 3 months ago

@check-spelling-bot Report

:red_circle: Please review

See the :open_file_folder: files view, the :scroll:action log, or :memo: job summary for details.

Unrecognized words (14) ``` ADPE anomymous Canx CCYY CNWs Comhairle communicty datas LCHO Matern Mcbride PPAs rbindlist SMRA ```
Previously acknowledged words that are now absent adpe canx ccyy cnws comhairle lcho matern mcbride ppas returnsthe smra 🫥
To accept these unrecognized words as correct and remove the previously acknowledged and now absent words, you could run the following commands ... in a clone of the [git@github.com:Public-Health-Scotland/source-linkage-files.git](https://github.com/Public-Health-Scotland/source-linkage-files.git) repository on the `it_deaths` branch ([:information_source: how do I use this?]( https://github.com/check-spelling/check-spelling/wiki/Accepting-Suggestions)): ``` sh curl -s -S -L 'https://raw.githubusercontent.com/check-spelling/check-spelling/main/apply.pl' | perl - 'https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10219778304/attempts/1' ```

OR

To have the bot accept them for you, reply quoting the following line: @check-spelling-bot apply updates.

Available :books: dictionaries could cover words (expected and unrecognized) not in the :blue_book: dictionary This includes both **expected items** (307) from .github/actions/spelling/expect.txt and **unrecognized words** (14) Dictionary | Entries | Covers | Uniquely -|-|-|- [cspell:fullstack/dict/fullstack.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/fullstack/dict/fullstack.txt)|419|3|3| [cspell:k8s/dict/k8s.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/k8s/dict/k8s.txt)|153|4|1| [cspell:php/dict/php.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/php/dict/php.txt)|1689|4|| [cspell:node/dict/node.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/node/dict/node.txt)|891|3|1| [cspell:npm/dict/npm.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/npm/dict/npm.txt)|302|3|| Consider adding them (in `.github/workflows/spelling.yml`) for `uses: check-spelling/check-spelling@main` in its `with`: ``` yml with: extra_dictionaries: cspell:fullstack/dict/fullstack.txt cspell:k8s/dict/k8s.txt cspell:php/dict/php.txt cspell:node/dict/node.txt cspell:npm/dict/npm.txt ``` To stop checking additional dictionaries, add (in `.github/workflows/spelling.yml`) for `uses: check-spelling/check-spelling@main` in its `with`: ``` yml check_extra_dictionaries: '' ```
Errors (1) See the [:open_file_folder: files](https://github.com/Public-Health-Scotland/source-linkage-files/pull/987/files/) view, the [:scroll:action log](https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10219778304/job/28278731899#step:4:1), or [:memo: job summary](https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10219778304/attempts/1#summary-28278731899) for details. [:x: Errors](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions) | Count -|- [:x: ignored-expect-variant](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions#ignored-expect-variant) | 3 See [:x: Event descriptions](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions) for more information.
If the flagged items are :exploding_head: false positives If items relate to a ... * binary file (or some other file you wouldn't want to check at all). Please add a file path to the `excludes.txt` file matching the containing file. File paths are Perl 5 Regular Expressions - you can [test]( https://www.regexplanet.com/advanced/perl/) yours before committing to verify it will match your files. `^` refers to the file's path from the root of the repository, so `^README\.md$` would exclude [README.md]( ../tree/HEAD/README.md) (on whichever branch you're using). * well-formed pattern. If you can write a [pattern](https://github.com/check-spelling/check-spelling/wiki/Configuration-Examples:-patterns) that would match it, try adding it to the `patterns.txt` file. Patterns are Perl 5 Regular Expressions - you can [test]( https://www.regexplanet.com/advanced/perl/) yours before committing to verify it will match your lines. Note that patterns can't match multiline strings.
github-actions[bot] commented 3 months ago

@check-spelling-bot Report

:red_circle: Please review

See the :open_file_folder: files view, the :scroll:action log, or :memo: job summary for details.

Unrecognized words (14) ``` ADPE anomymous Canx CCYY CNWs Comhairle communicty datas LCHO Matern Mcbride PPAs rbindlist SMRA ```
Previously acknowledged words that are now absent adpe canx ccyy cnws comhairle lcho matern mcbride ppas returnsthe smra 🫥
To accept these unrecognized words as correct and remove the previously acknowledged and now absent words, you could run the following commands ... in a clone of the [git@github.com:Public-Health-Scotland/source-linkage-files.git](https://github.com/Public-Health-Scotland/source-linkage-files.git) repository on the `it_deaths` branch ([:information_source: how do I use this?]( https://github.com/check-spelling/check-spelling/wiki/Accepting-Suggestions)): ``` sh curl -s -S -L 'https://raw.githubusercontent.com/check-spelling/check-spelling/main/apply.pl' | perl - 'https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10245911621/attempts/1' ```

OR

To have the bot accept them for you, reply quoting the following line: @check-spelling-bot apply updates.

Available :books: dictionaries could cover words (expected and unrecognized) not in the :blue_book: dictionary This includes both **expected items** (307) from .github/actions/spelling/expect.txt and **unrecognized words** (14) Dictionary | Entries | Covers | Uniquely -|-|-|- [cspell:fullstack/dict/fullstack.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/fullstack/dict/fullstack.txt)|419|3|3| [cspell:k8s/dict/k8s.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/k8s/dict/k8s.txt)|153|4|1| [cspell:php/dict/php.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/php/dict/php.txt)|1689|4|| [cspell:node/dict/node.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/node/dict/node.txt)|891|3|1| [cspell:npm/dict/npm.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/npm/dict/npm.txt)|302|3|| Consider adding them (in `.github/workflows/spelling.yml`) for `uses: check-spelling/check-spelling@main` in its `with`: ``` yml with: extra_dictionaries: cspell:fullstack/dict/fullstack.txt cspell:k8s/dict/k8s.txt cspell:php/dict/php.txt cspell:node/dict/node.txt cspell:npm/dict/npm.txt ``` To stop checking additional dictionaries, add (in `.github/workflows/spelling.yml`) for `uses: check-spelling/check-spelling@main` in its `with`: ``` yml check_extra_dictionaries: '' ```
Errors (1) See the [:open_file_folder: files](https://github.com/Public-Health-Scotland/source-linkage-files/pull/987/files/) view, the [:scroll:action log](https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10245911621/job/28341937332#step:4:1), or [:memo: job summary](https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10245911621/attempts/1#summary-28341937332) for details. [:x: Errors](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions) | Count -|- [:x: ignored-expect-variant](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions#ignored-expect-variant) | 3 See [:x: Event descriptions](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions) for more information.
If the flagged items are :exploding_head: false positives If items relate to a ... * binary file (or some other file you wouldn't want to check at all). Please add a file path to the `excludes.txt` file matching the containing file. File paths are Perl 5 Regular Expressions - you can [test]( https://www.regexplanet.com/advanced/perl/) yours before committing to verify it will match your files. `^` refers to the file's path from the root of the repository, so `^README\.md$` would exclude [README.md]( ../tree/HEAD/README.md) (on whichever branch you're using). * well-formed pattern. If you can write a [pattern](https://github.com/check-spelling/check-spelling/wiki/Configuration-Examples:-patterns) that would match it, try adding it to the `patterns.txt` file. Patterns are Perl 5 Regular Expressions - you can [test]( https://www.regexplanet.com/advanced/perl/) yours before committing to verify it will match your lines. Note that patterns can't match multiline strings.
github-actions[bot] commented 3 months ago

@check-spelling-bot Report

:red_circle: Please review

See the :open_file_folder: files view, the :scroll:action log, or :memo: job summary for details.

Unrecognized words (14) ``` ADPE anomymous Canx CCYY CNWs Comhairle communicty datas LCHO Matern Mcbride PPAs rbindlist SMRA ```
Previously acknowledged words that are now absent adpe canx ccyy cnws comhairle lcho matern mcbride ppas returnsthe smra 🫥
To accept these unrecognized words as correct and remove the previously acknowledged and now absent words, you could run the following commands ... in a clone of the [git@github.com:Public-Health-Scotland/source-linkage-files.git](https://github.com/Public-Health-Scotland/source-linkage-files.git) repository on the `it_deaths` branch ([:information_source: how do I use this?]( https://github.com/check-spelling/check-spelling/wiki/Accepting-Suggestions)): ``` sh curl -s -S -L 'https://raw.githubusercontent.com/check-spelling/check-spelling/main/apply.pl' | perl - 'https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10247484327/attempts/1' ```

OR

To have the bot accept them for you, reply quoting the following line: @check-spelling-bot apply updates.

Available :books: dictionaries could cover words (expected and unrecognized) not in the :blue_book: dictionary This includes both **expected items** (307) from .github/actions/spelling/expect.txt and **unrecognized words** (14) Dictionary | Entries | Covers | Uniquely -|-|-|- [cspell:fullstack/dict/fullstack.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/fullstack/dict/fullstack.txt)|419|3|3| [cspell:k8s/dict/k8s.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/k8s/dict/k8s.txt)|153|4|1| [cspell:php/dict/php.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/php/dict/php.txt)|1689|4|| [cspell:node/dict/node.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/node/dict/node.txt)|891|3|1| [cspell:npm/dict/npm.txt](https://raw.githubusercontent.com/check-spelling/cspell-dicts/v20230509/dictionaries/npm/dict/npm.txt)|302|3|| Consider adding them (in `.github/workflows/spelling.yml`) for `uses: check-spelling/check-spelling@main` in its `with`: ``` yml with: extra_dictionaries: cspell:fullstack/dict/fullstack.txt cspell:k8s/dict/k8s.txt cspell:php/dict/php.txt cspell:node/dict/node.txt cspell:npm/dict/npm.txt ``` To stop checking additional dictionaries, add (in `.github/workflows/spelling.yml`) for `uses: check-spelling/check-spelling@main` in its `with`: ``` yml check_extra_dictionaries: '' ```
Errors (1) See the [:open_file_folder: files](https://github.com/Public-Health-Scotland/source-linkage-files/pull/987/files/) view, the [:scroll:action log](https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10247484327/job/28346772827#step:4:1), or [:memo: job summary](https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/10247484327/attempts/1#summary-28346772827) for details. [:x: Errors](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions) | Count -|- [:x: ignored-expect-variant](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions#ignored-expect-variant) | 3 See [:x: Event descriptions](https://github.com/check-spelling/check-spelling/wiki/Event-descriptions) for more information.
If the flagged items are :exploding_head: false positives If items relate to a ... * binary file (or some other file you wouldn't want to check at all). Please add a file path to the `excludes.txt` file matching the containing file. File paths are Perl 5 Regular Expressions - you can [test]( https://www.regexplanet.com/advanced/perl/) yours before committing to verify it will match your files. `^` refers to the file's path from the root of the repository, so `^README\.md$` would exclude [README.md]( ../tree/HEAD/README.md) (on whichever branch you're using). * well-formed pattern. If you can write a [pattern](https://github.com/check-spelling/check-spelling/wiki/Configuration-Examples:-patterns) that would match it, try adding it to the `patterns.txt` file. Patterns are Perl 5 Regular Expressions - you can [test]( https://www.regexplanet.com/advanced/perl/) yours before committing to verify it will match your lines. Note that patterns can't match multiline strings.
lizihao-anu commented 3 months ago

Should be ready for review. @Jennit07 @SwiftySalmon