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Putnam-Lab / Lab_Management

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SRA and Genbank uploads for all sequence data #47

Closed hputnam closed 2 weeks ago

hputnam commented 1 year ago

https://docs.google.com/spreadsheets/d/1qDGGpLFcmoO-fIFOPSUhPcxi4ErXIq2PkQbxvCCzI40/edit#gid=0

hputnam commented 1 year ago

https://github.com/Putnam-Lab/Lab_Management/tree/master/Bioinformatics_%26_Coding/Data_Mangament

AHuffmyer commented 1 year ago

Confirmed Mcap2020 ITS2, 16S, and TagSeq sequences uploaded to SRA with metadata added to our lab sequencing inventory. Project PRJNA900235

AHuffmyer commented 1 year ago

We need to revisit this spreadsheet at a lab meeting to go over the format of metadata and update all projects. https://docs.google.com/spreadsheets/d/1qDGGpLFcmoO-fIFOPSUhPcxi4ErXIq2PkQbxvCCzI40/edit#gid=0

hputnam commented 4 months ago

please confirm here in a comment that every sequencing dataset you worked with is listed on this file: https://docs.google.com/spreadsheets/d/1qDGGpLFcmoO-fIFOPSUhPcxi4ErXIq2PkQbxvCCzI40/edit#gid=0

@daniellembecker @flofields @zdellaert @JillAshey @AHuffmyer @PierrickHarnay @hputnam

AHuffmyer commented 4 months ago

Confirmed all my sequencing data that is in hand is accounted for on this sheet. Are E5 timeseries deep dive sequencing projects documented elsewhere?

zdellaert commented 4 months ago

Confirmed Pdam Heron Island pCO2

daniellembecker commented 4 months ago

Confirmed 20231214_Apulchra_RiboDepletion: PRJNA1099265 (Becker)

AHuffmyer commented 3 months ago

Confirmed all files are updated with Andromeda backup location