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Putnam-Lab / Lab_Management

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RNASeq power analysis #62

Closed JillAshey closed 1 year ago

JillAshey commented 1 year ago

Before our RNASeq experiments, we should be running a power analysis to determine sample sizes, depth, and effect sizes. See Jill's notebook post regarding RNASeq power analysis in her sediment stress paper here.

AHuffmyer commented 1 year ago

Info on replication, sample sizes, depth, best practice in a PPT here: https://docs.google.com/presentation/d/1pv0vSPiI0nR2mbrRKB958miggruZz-ft/edit

JillAshey commented 1 year ago

updated code for RNAseq power analysis: https://github.com/JillAshey/SedimentStress/blob/master/RAnalysis/RNASeqPower.Rmd