refactor `SequenceNetwork` - Githubissues

PyEED / pyeed

🧬 Toolkit to create, annotate, and analyze specialized sequence databases

https://pyeed.github.io/pyeed/

MIT License

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refactor `SequenceNetwork` #61

Closed haeussma closed 7 months ago

haeussma commented 7 months ago

Should enable to:

generate network, based on SequenceRecord object
serialization to json
method to add identity attribute to each edge, based on pairwise alignment
method to calculation of betweenness
method to calculatecentrality
cytoscope visualization