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PyEED
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pyeed
🧬 Toolkit to create, annotate, and analyze specialized sequence databases
https://pyeed.github.io/pyeed/
MIT License
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5
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Add tools such as SoluProt, FireProt, and HotSpotWizard
#52
haeussma
opened
7 months ago
0
Python Pyeed YAML Validator throws error
#51
NiklasAbraham
closed
7 months ago
0
Refactor network
#50
haeussma
closed
8 months ago
0
Add mmseqs2
#49
haeussma
closed
8 months ago
0
External db refactor
#48
haeussma
closed
8 months ago
0
Fix incomplete read
#47
haeussma
closed
8 months ago
0
Docs update installation
#46
haeussma
closed
8 months ago
0
adaption of the parser
#45
alacheim
closed
8 months ago
0
Reset pydanticv2 changes
#44
haeussma
closed
9 months ago
1
Update README.md
#43
haeussma
closed
9 months ago
0
Create __init__.py
#42
haeussma
closed
9 months ago
0
Delete pyeed directory
#41
haeussma
closed
9 months ago
0
Rename __init__.py to __init__.py
#40
haeussma
closed
9 months ago
0
Alignments
#39
haeussma
closed
9 months ago
0
Update README.md
#38
haeussma
closed
9 months ago
0
Refactor dm
#37
haeussma
closed
10 months ago
0
Manual query input
#36
prinsalaric
closed
9 months ago
0
multi_pairwuse_alignment prints alignments
#34
haeussma
closed
7 months ago
1
3d network
#33
haeussma
closed
11 months ago
0
Update README.md
#32
haeussma
closed
12 months ago
0
Test sdrdm pydantic v2
#31
haeussma
closed
12 months ago
0
Generalize Substate object
#30
haeussma
closed
7 months ago
0
Substrate citation dm
#29
haeussma
closed
12 months ago
0
Network refactor
#28
alacheim
closed
1 year ago
0
Extension of data model - References and Substrates
#27
gfeuerriegel
opened
1 year ago
2
added option to choose database for pblast
#26
haeussma
closed
1 year ago
0
Alignments
#25
haeussma
closed
1 year ago
1
fixed issues blast issue
#24
haeussma
closed
1 year ago
0
Blast enhancement
#23
haeussma
closed
1 year ago
0
Logging for blast search parameters
#22
haeussma
closed
7 months ago
0
Link to PyEED data model
#21
itbjpl
closed
1 year ago
1
Datamodel refactor
#20
haeussma
closed
1 year ago
1
Taxonomic ranks of `Organism` incorrect
#19
haeussma
closed
7 months ago
0
Alignments
#18
haeussma
closed
7 months ago
0
[Example] - Updated Protein Sequence Example
#17
JR-1991
closed
1 year ago
0
Update model.md
#16
itbjpl
closed
1 year ago
1
Data model: ProteinSequence and NucleotideSequence
#15
itbjpl
closed
1 year ago
0
Naming of the GitHub/PyEED/... tree
#14
itbjpl
closed
7 months ago
2
fixed typo in example
#13
haeussma
closed
1 year ago
0
Remove Equivalence object
#12
torogi94
closed
1 year ago
0
removed typo
#11
haeussma
closed
1 year ago
0
Information from UniProt should be parsed via REST-API
#10
haeussma
closed
7 months ago
1
Installation issue
#9
AlexWindels
closed
1 year ago
1
Inconclusive definition of `Equivalence` in the data model
#8
haeussma
closed
1 year ago
3
Dna sequence
#7
haeussma
closed
1 year ago
0
API update
#6
haeussma
closed
1 year ago
0
Develop
#5
haeussma
closed
1 year ago
0
Update model.md
#4
maxim945
closed
1 year ago
0
Maxim945 patch 3
#3
maxim945
closed
1 year ago
0
Maxim945 patch 4
#2
maxim945
closed
1 year ago
0
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