Tutorial does not work

[AlexanderPlarre]

Error in Snakefile while running the PyPSA-EUR first tutorial

Hey Guys,

First and foremost, I haven't been working with Git for long, and I'm hoping this is the appropriate platform to report a bug I'm unable to resolve. I strongly suspect it's not due to user error, as in the past three weeks, two other Stack Overflow posts have surfaced with the exact same issue. I'm hopeful that you can assist newcomers like myself 😊

I am encountering precisely the same issue as the individual in their Stack Overflow post (below). As a newcomer to Snakemake, I'm struggling to discern the exact nature of the problem. I'm attempting to execute PyPSA on a Windows machine (specifically, Windows 11, if that detail is pertinent). I'm receiving the exact error code described. Assistance from anyone familiar with this matter would be greatly appreciated.

My version is the latest, i installed it via git request and did all steps like in the tutorial. Thanks

" I have seen another post in this regard, but I assume there is a lack of context so I will try to explain in more detail here to see if anyone can help or has experienced the same issue and managed to overcome it.

I have followed the installation steps as described in the documentation. Cloning the repository and creating a new environment with the "environment.yaml" file in the /envs folder. I do this and I do not face any errors, all packages seem to be installed without problems.

Now I try to follow the "Tutorial: Electricity-Only". To do so I run the following command that is provided in the tutorial: "snakemake -call results/test-elec/networks/elec_s_6_ec_lcopt_Co2L-24H.nc --configfile config/test/config.electricity.yaml". When I do this I face this error:

(pypsa-eur) C:\Users\DELBARRIOALVAREZ_Y\pypsa-eur>snakemake -call results/test-elec/networks/elec_s_6_ec_lcopt_Co2L-24H.nc --configfile config/test/config.electricity.yaml IndentationError in file C:\Users\DELBARRIOALVAREZ_Y\pypsa-eur\Snakefile, line 59: expected an indented block after 'if' statement on line 81: script:

I don't understand the error or the cause because when I go to the Snakefile, line 59 has no different indentation than previous lines. I have tried deleting the if condition and put directly the include command of the config["foresight"] file to see what would happen and the same kind of error appears but in other lines.

I am completely lost, I have never used snakemake before. I have tried to investigate how this package works and I have seen that everything is in Linux, but I have windows. PyPSA works perfectly for me. Is pypsa-eur compatible with Windows?

Any help would be appreciated. "

https://stackoverflow.com/questions/78218385/error-in-snakefile-while-running-the-pypsa-eur-first-tutorial

https://stackoverflow.com/questions/78199845/error-in-the-snakefile-when-running-tutorial

Error Message

IndentationError in file C:\Users___\pypsa-eur\Snakefile, line 59: expected an indented block after 'if' statement on line 81: script:

Name Version Build Channel

affine 2.4.0 pyhd8ed1ab_0 conda-forge aiohttp 3.9.3 py311ha68e1ae_1 conda-forge aiosignal 1.3.1 pyhd8ed1ab_0 conda-forge amply 0.1.6 pyhd8ed1ab_0 conda-forge appdirs 1.4.4 pyh9f0ad1d_0 conda-forge argparse-dataclass 2.0.0 pyhd8ed1ab_0 conda-forge asttokens 2.4.1 pyhd8ed1ab_0 conda-forge atlite 0.2.12 pyhd8ed1ab_0 conda-forge attrs 23.2.0 pyh71513ae_0 conda-forge aws-c-auth 0.7.16 h7613915_8 conda-forge aws-c-cal 0.6.10 hf6fcf4e_2 conda-forge aws-c-common 0.9.14 hcfcfb64_0 conda-forge aws-c-compression 0.2.18 hf6fcf4e_2 conda-forge aws-c-event-stream 0.4.2 h3df98b0_6 conda-forge aws-c-http 0.8.1 h4e3df0f_7 conda-forge aws-c-io 0.14.6 hf0b8b6f_2 conda-forge aws-c-mqtt 0.10.3 h96fac68_2 conda-forge aws-c-s3 0.5.5 h08df315_0 conda-forge aws-c-sdkutils 0.1.15 hf6fcf4e_2 conda-forge aws-checksums 0.1.18 hf6fcf4e_2 conda-forge aws-crt-cpp 0.26.4 h944602d_3 conda-forge aws-sdk-cpp 1.11.267 hfaf0dd0_4 conda-forge azure-core-cpp 1.11.1 h249a519_1 conda-forge azure-storage-blobs-cpp 12.10.0 h91493d7_1 conda-forge azure-storage-common-cpp 12.5.0 h91493d7_4 conda-forge beautifulsoup4 4.12.3 pyha770c72_0 conda-forge blosc 1.21.5 hdccc3a2_0 conda-forge bokeh 3.4.0 pyhd8ed1ab_0 conda-forge boto 2.49.0 py_0 conda-forge boto3 1.34.77 pyhd8ed1ab_0 conda-forge botocore 1.34.77 pyge310_1234567_0 conda-forge bottleneck 1.3.8 py311h59ca53f_0 conda-forge branca 0.7.1 pyhd8ed1ab_0 conda-forge brotli 1.1.0 hcfcfb64_1 conda-forge brotli-bin 1.1.0 hcfcfb64_1 conda-forge brotli-python 1.1.0 py311h12c1d0e_1 conda-forge bz2file 0.98 py_0 conda-forge bzip2 1.0.8 hcfcfb64_5 conda-forge c-ares 1.28.1 hcfcfb64_0 conda-forge c-blosc2 2.14.1 h183a6f4_0 conda-forge ca-certificates 2024.2.2 h56e8100_0 conda-forge cachetools 5.3.3 pyhd8ed1ab_0 conda-forge cairo 1.18.0 h1fef639_0 conda-forge cartopy 0.22.0 py311hf63dbb6_1 conda-forge cdsapi 0.6.1 pyhd8ed1ab_0 conda-forge certifi 2024.2.2 pyhd8ed1ab_0 conda-forge cffi 1.16.0 py311ha68e1ae_0 conda-forge cfgv 3.3.1 pyhd8ed1ab_0 conda-forge cfitsio 4.4.0 h9b0cee5_0 conda-forge cftime 1.6.3 py311h59ca53f_0 conda-forge charset-normalizer 3.3.2 pyhd8ed1ab_0 conda-forge click 8.1.7 win_pyh7428d3b_0 conda-forge click-plugins 1.1.1 py_0 conda-forge cligj 0.7.2 pyhd8ed1ab_1 conda-forge cloudpickle 3.0.0 pyhd8ed1ab_0 conda-forge colorama 0.4.6 pyhd8ed1ab_0 conda-forge comm 0.2.2 pyhd8ed1ab_0 conda-forge conda-inject 1.3.1 pyhd8ed1ab_0 conda-forge configargparse 1.7 pyhd8ed1ab_0 conda-forge connection_pool 0.0.3 pyhd3deb0d_0 conda-forge contourpy 1.2.0 py311h005e61a_0 conda-forge country_converter 1.2 pyhd8ed1ab_0 conda-forge cppad 20240000.4 h63175ca_0 conda-forge cryptography 42.0.5 py311h28e9c30_0 conda-forge cycler 0.12.1 pyhd8ed1ab_0 conda-forge cytoolz 0.12.3 py311ha68e1ae_0 conda-forge dask 2024.4.0 pyhd8ed1ab_0 conda-forge dask-core 2024.4.0 pyhd8ed1ab_0 conda-forge dask-expr 1.0.9 pyhd8ed1ab_0 conda-forge datrie 0.8.2 py311ha68e1ae_7 conda-forge debugpy 1.8.1 py311h12c1d0e_0 conda-forge decorator 5.1.1 pyhd8ed1ab_0 conda-forge deprecation 2.1.0 pyh9f0ad1d_0 conda-forge descartes 1.1.0 py_4 conda-forge distlib 0.3.8 pyhd8ed1ab_0 conda-forge distributed 2024.4.0 pyhd8ed1ab_0 conda-forge docutils 0.20.1 py311h1ea47a8_3 conda-forge dpath 2.1.6 pyha770c72_0 conda-forge entsoe-py 0.6.7 pyhd8ed1ab_0 conda-forge et_xmlfile 1.1.0 pyhd8ed1ab_0 conda-forge exceptiongroup 1.2.0 pyhd8ed1ab_2 conda-forge executing 2.0.1 pyhd8ed1ab_0 conda-forge expat 2.6.2 h63175ca_0 conda-forge filelock 3.13.3 pyhd8ed1ab_0 conda-forge fiona 1.9.6 py311hbcf8545_0 conda-forge fmt 10.2.1 h181d51b_0 conda-forge folium 0.16.0 pyhd8ed1ab_0 conda-forge font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge font-ttf-inconsolata 3.000 h77eed37_0 conda-forge font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge font-ttf-ubuntu 0.83 h77eed37_1 conda-forge fontconfig 2.14.2 hbde0cde_0 conda-forge fonts-conda-ecosystem 1 0 conda-forge fonts-conda-forge 1 0 conda-forge fonttools 4.50.0 py311ha68e1ae_0 conda-forge freetype 2.12.1 hdaf720e_2 conda-forge freexl 2.0.0 h8276f4a_0 conda-forge fribidi 1.0.10 h8d14728_0 conda-forge frozenlist 1.4.1 py311ha68e1ae_0 conda-forge fsspec 2024.3.1 pyhca7485f_0 conda-forge gdal 3.8.4 py311h21a6730_5 conda-forge geographiclib 2.0 pyhd8ed1ab_0 conda-forge geojson-rewind 1.1.0 pyhd8ed1ab_0 conda-forge geopandas 0.14.3 pyhd8ed1ab_0 conda-forge geopandas-base 0.14.3 pyha770c72_0 conda-forge geopy 2.4.1 pyhd8ed1ab_1 conda-forge geos 3.12.1 h1537add_0 conda-forge geotiff 1.7.1 hbf5ca3a_15 conda-forge getopt-win32 0.1 hcfcfb64_1 conda-forge gettext 0.21.1 h5728263_0 conda-forge gitdb 4.0.11 pyhd8ed1ab_0 conda-forge gitpython 3.1.43 pyhd8ed1ab_0 conda-forge glib 2.80.0 h39d0aa6_1 conda-forge glib-tools 2.80.0 h0a98069_1 conda-forge glpk 5.0 h8ffe710_0 conda-forge google-api-core 2.18.0 pyhd8ed1ab_0 conda-forge google-auth 2.29.0 pyhca7485f_0 conda-forge google-cloud-core 2.4.1 pyhd8ed1ab_0 conda-forge google-cloud-storage 2.16.0 pyhca7485f_0 conda-forge google-crc32c 1.1.2 py311h48d9ab2_5 conda-forge google-resumable-media 2.7.0 pyhd8ed1ab_0 conda-forge googleapis-common-protos 1.63.0 pyhd8ed1ab_0 conda-forge graphite2 1.3.13 h63175ca_1003 conda-forge graphviz 9.0.0 h51cb2cd_1 conda-forge grpcio 1.62.1 py311h5bc0dda_0 conda-forge gst-plugins-base 1.22.9 h001b923_1 conda-forge gstreamer 1.22.9 hb4038d2_1 conda-forge gts 0.7.6 h6b5321d_4 conda-forge gurobipy 11.0.1 pypi_0 pypi harfbuzz 8.3.0 h7ab893a_0 conda-forge hdf4 4.2.15 h5557f11_7 conda-forge hdf5 1.14.3 nompi_h73e8ff5_100 conda-forge highspy 1.5.3 pypi_0 pypi humanfriendly 10.0 py311h1ea47a8_5 conda-forge icu 73.2 h63175ca_0 conda-forge identify 2.5.35 pyhd8ed1ab_0 conda-forge idna 3.6 pyhd8ed1ab_0 conda-forge immutables 0.20 py311ha68e1ae_1 conda-forge importlib-metadata 7.1.0 pyha770c72_0 conda-forge importlib_metadata 7.1.0 hd8ed1ab_0 conda-forge importlib_resources 6.4.0 pyhd8ed1ab_0 conda-forge iniconfig 2.0.0 pyhd8ed1ab_0 conda-forge ipopt 3.14.14 h1709daf_1 conda-forge ipykernel 6.29.3 pyha63f2e9_0 conda-forge ipython 8.22.2 pyh7428d3b_0 conda-forge jedi 0.19.1 pyhd8ed1ab_0 conda-forge jinja2 3.1.3 pyhd8ed1ab_0 conda-forge jmespath 1.0.1 pyhd8ed1ab_0 conda-forge joblib 1.3.2 pyhd8ed1ab_0 conda-forge jsonschema 4.21.1 pyhd8ed1ab_0 conda-forge jsonschema-specifications 2023.12.1 pyhd8ed1ab_0 conda-forge jupyter_client 8.6.1 pyhd8ed1ab_0 conda-forge jupyter_core 5.7.2 py311h1ea47a8_0 conda-forge kealib 1.5.3 hd248416_0 conda-forge kiwisolver 1.4.5 py311h005e61a_1 conda-forge krb5 1.21.2 heb0366b_0 conda-forge lcms2 2.16 h67d730c_0 conda-forge lerc 4.0.0 h63175ca_0 conda-forge libabseil 20240116.1 cxx17_h63175ca_2 conda-forge libaec 1.1.3 h63175ca_0 conda-forge libarchive 3.7.2 h313118b_1 conda-forge libarrow 15.0.2 h878f99b_1_cpu conda-forge libarrow-acero 15.0.2 h63175ca_1_cpu conda-forge libarrow-dataset 15.0.2 h63175ca_1_cpu conda-forge libarrow-flight 15.0.2 h02312f3_1_cpu conda-forge libarrow-flight-sql 15.0.2 h55b4db4_1_cpu conda-forge libarrow-gandiva 15.0.2 h3f2ff47_1_cpu conda-forge libarrow-substrait 15.0.2 h89268de_1_cpu conda-forge libblas 3.9.0 21_win64_openblas conda-forge libboost-headers 1.84.0 h57928b3_2 conda-forge libbrotlicommon 1.1.0 hcfcfb64_1 conda-forge libbrotlidec 1.1.0 hcfcfb64_1 conda-forge libbrotlienc 1.1.0 hcfcfb64_1 conda-forge libcblas 3.9.0 21_win64_openblas conda-forge libclang13 18.1.2 default_hf64faad_1 conda-forge libcrc32c 1.1.2 h0e60522_0 conda-forge libcurl 8.7.1 hd5e4a3a_0 conda-forge libdeflate 1.20 hcfcfb64_0 conda-forge libevent 2.1.12 h3671451_1 conda-forge libexpat 2.6.2 h63175ca_0 conda-forge libffi 3.4.2 h8ffe710_5 conda-forge libflang 5.0.0 h6538335_20180525 conda-forge libgd 2.3.3 h312136b_9 conda-forge libgdal 3.8.4 hf83a0e2_5 conda-forge libglib 2.80.0 h39d0aa6_1 conda-forge libgoogle-cloud 2.22.0 h9cad5c0_1 conda-forge libgoogle-cloud-storage 2.22.0 hb581fae_1 conda-forge libgrpc 1.62.1 h5273850_0 conda-forge libhwloc 2.9.3 default_haede6df_1009 conda-forge libiconv 1.17 hcfcfb64_2 conda-forge libjpeg-turbo 3.0.0 hcfcfb64_1 conda-forge libkml 1.3.0 haf3e7a6_1018 conda-forge liblapack 3.9.0 21_win64_openblas conda-forge libnetcdf 4.9.2 nompi_h07c049d_113 conda-forge libogg 1.3.4 h8ffe710_1 conda-forge libopenblas 0.3.26 pthreads_hc140b1d_0 conda-forge libparquet 15.0.2 h7ec3a38_1_cpu conda-forge libpng 1.6.43 h19919ed_0 conda-forge libpq 16.2 hdb24f17_1 conda-forge libprotobuf 4.25.3 h503648d_0 conda-forge libre2-11 2023.09.01 hf8d8778_2 conda-forge librttopo 1.1.0 h94c4f80_15 conda-forge libsodium 1.0.18 h8d14728_1 conda-forge libspatialindex 1.9.3 h39d44d4_4 conda-forge libspatialite 5.1.0 hf2f0abc_4 conda-forge libsqlite 3.45.2 hcfcfb64_0 conda-forge libssh2 1.11.0 h7dfc565_0 conda-forge libthrift 0.19.0 ha2b3283_1 conda-forge libtiff 4.6.0 hddb2be6_3 conda-forge libutf8proc 2.8.0 h82a8f57_0 conda-forge libvorbis 1.3.7 h0e60522_0 conda-forge libwebp 1.3.2 hcfcfb64_1 conda-forge libwebp-base 1.3.2 hcfcfb64_0 conda-forge libxcb 1.15 hcd874cb_0 conda-forge libxml2 2.12.6 hc3477c8_1 conda-forge libxslt 1.1.39 h3df6e99_0 conda-forge libzip 1.10.1 h1d365fa_3 conda-forge libzlib 1.2.13 hcfcfb64_5 conda-forge linopy 0.3.8 pyhd8ed1ab_0 conda-forge llvm-meta 5.0.0 0 conda-forge locket 1.0.0 pyhd8ed1ab_0 conda-forge lxml 5.1.0 py311h064e5ff_0 conda-forge lz4 4.3.3 py311haddf500_0 conda-forge lz4-c 1.9.4 hcfcfb64_0 conda-forge lzo 2.10 he774522_1000 conda-forge m2w64-gcc-libgfortran 5.3.0 6 conda-forge m2w64-gcc-libs 5.3.0 7 conda-forge m2w64-gcc-libs-core 5.3.0 7 conda-forge m2w64-gmp 6.1.0 2 conda-forge m2w64-libwinpthread-git 5.0.0.4634.697f757 2 conda-forge mapclassify 2.6.1 pyhd8ed1ab_0 conda-forge markupsafe 2.1.5 py311ha68e1ae_0 conda-forge matplotlib 3.8.3 py311h1ea47a8_0 conda-forge matplotlib-base 3.8.3 py311h6e989c2_0 conda-forge matplotlib-inline 0.1.6 pyhd8ed1ab_0 conda-forge memory_profiler 0.61.0 pyhd8ed1ab_0 conda-forge metis 5.1.0 h63175ca_1007 conda-forge minizip 4.0.5 h5bed578_0 conda-forge mpfr 4.2.1 h64bf75a_0 conda-forge mpir 3.0.0 he025d50_1002 conda-forge msgpack-python 1.0.7 py311h005e61a_0 conda-forge msys2-conda-epoch 20160418 1 conda-forge multidict 6.0.5 py311ha68e1ae_0 conda-forge mumps-seq 5.6.2 h1f49738_4 conda-forge munkres 1.1.4 pyh9f0ad1d_0 conda-forge nbformat 5.10.4 pyhd8ed1ab_0 conda-forge nest-asyncio 1.6.0 pyhd8ed1ab_0 conda-forge netcdf4 1.6.5 nompi_py311he019f65_100 conda-forge networkx 3.2.1 pyhd8ed1ab_0 conda-forge nodeenv 1.8.0 pyhd8ed1ab_0 conda-forge nomkl 1.0 h5ca1d4c_0 conda-forge numexpr 2.9.0 py311h0aebda5_100 conda-forge numpy 1.26.4 py311h0b4df5a_0 conda-forge oauthlib 3.2.2 pypi_0 pypi openjdk 21.0.2 h57928b3_0 conda-forge openjpeg 2.5.2 h3d672ee_0 conda-forge openmp 5.0.0 vc14_1 conda-forge openpyxl 3.1.2 py311ha68e1ae_1 conda-forge openssl 3.2.1 hcfcfb64_1 conda-forge orc 2.0.0 heb0c069_0 conda-forge packaging 24.0 pyhd8ed1ab_0 conda-forge pandas 2.2.1 py311hf63dbb6_0 conda-forge pango 1.52.2 h07c897b_0 conda-forge parso 0.8.3 pyhd8ed1ab_0 conda-forge partd 1.4.1 pyhd8ed1ab_0 conda-forge patsy 0.5.6 pyhd8ed1ab_0 conda-forge pcre2 10.43 h17e33f8_0 conda-forge pickleshare 0.7.5 py_1003 conda-forge pillow 10.3.0 py311h6819b35_0 conda-forge pip 24.0 pyhd8ed1ab_0 conda-forge pixman 0.43.4 h63175ca_0 conda-forge pkgutil-resolve-name 1.3.10 pyhd8ed1ab_1 conda-forge plac 1.4.3 pyhd8ed1ab_0 conda-forge platformdirs 4.2.0 pyhd8ed1ab_0 conda-forge pluggy 1.4.0 pyhd8ed1ab_0 conda-forge ply 3.11 py_1 conda-forge poppler 24.03.0 hc2f3c52_0 conda-forge poppler-data 0.4.12 hd8ed1ab_0 conda-forge postgresql 16.2 h94c9ec1_1 conda-forge powerplantmatching 0.5.11 pyhd8ed1ab_0 conda-forge pre-commit 3.7.0 pyha770c72_0 conda-forge progressbar2 4.4.2 pyhd8ed1ab_0 conda-forge proj 9.3.1 he13c7e8_0 conda-forge prompt-toolkit 3.0.42 pyha770c72_0 conda-forge proto-plus 1.23.0 pyhd8ed1ab_0 conda-forge protobuf 4.25.3 py311hb041b4a_0 conda-forge psutil 5.9.8 py311ha68e1ae_0 conda-forge pthread-stubs 0.4 hcd874cb_1001 conda-forge pthreads-win32 2.9.1 hfa6e2cd_3 conda-forge pulp 2.8.0 py311h1ea47a8_0 conda-forge pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge py-cpuinfo 9.0.0 pyhd8ed1ab_0 conda-forge pyarrow 15.0.2 py311h6a6099b_1_cpu conda-forge pyarrow-hotfix 0.6 pyhd8ed1ab_0 conda-forge pyasn1 0.5.1 pyhd8ed1ab_0 conda-forge pyasn1-modules 0.3.0 pyhd8ed1ab_0 conda-forge pycountry 22.3.5 pyhd8ed1ab_0 conda-forge pycparser 2.22 pyhd8ed1ab_0 conda-forge pygments 2.17.2 pyhd8ed1ab_0 conda-forge pyomo 6.6.1 py311h12c1d0e_0 conda-forge pyopenssl 24.0.0 pyhd8ed1ab_0 conda-forge pyparsing 3.1.2 pyhd8ed1ab_0 conda-forge pyproj 3.6.1 py311h82130bc_5 conda-forge pypsa 0.27.1 pyhd8ed1ab_0 conda-forge pyqt 5.15.9 py311h125bc19_5 conda-forge pyqt5-sip 12.12.2 py311h12c1d0e_5 conda-forge pyreadline3 3.4.1 py311h1ea47a8_3 conda-forge pyscipopt 5.0.0 py311h12c1d0e_0 conda-forge pyshp 2.3.1 pyhd8ed1ab_0 conda-forge pysocks 1.7.1 pyh0701188_6 conda-forge pytables 3.9.2 py311heec7198_1 conda-forge pytest 8.1.1 pyhd8ed1ab_0 conda-forge python 3.11.8 h2628c8c_0_cpython conda-forge python-dateutil 2.9.0 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[sjgersen]

Hi Alexander,

I am experiencing the same issue. What operating system are you using? I am using Windows 10.

[AlexanderPlarre]

I am using Windows 11

[Naneno1234]

Hello,

I am experiencing the same Problem on Windows 10.

[fneum]

Thanks for flagging this. We have been aware of but could not solve the issue either, as none of the developers are Windows users. We'd be happy if someone found the fix and submitted a PR. In the meantime, use a Linux VM.

[Zion-tunan]

I meet the similar question with Mac. And when I tried to change the "configfile" command in the snakemake file, it results in the error warning contents changed to "No values given for wildcard 'simpl'." So, the answer maybe listed here. But I just decided to move forward....

[fneum]

This should be fixed now with snakemake 8.11 and higher. Please reopen if that's not the case.