fneum
commented
1 month ago For Windows, we recommend WSL. This looks like an OS-specific problem.
Closed MichaelGeFr closed 1 month ago
fneum
commented
1 month ago reopen if issue persists on Windows with WSL
MichaelGeFr
commented
1 month ago When using WSL the problem does not persist. Thank you!
Checklist note
masterbranchpypsa-eurenvironment. Update viaconda env update -f envs/environment.yaml.Bug description
When installing the environment based on the environment.yaml given in the latest master branch (2 days since last commit) (conda env create -f envs/environment.yaml) and executing the sknakemake command (snakemake -call results/test-elec/networks/elec_s_6_eclcopt.nc --configfile config/test/config.electricity.yaml) according to the tutorial I receive the following error.
Error message
[Wed Jul 31 07:35:08 2024] Finished job 5. 19 of 24 steps (79%) done Select jobs to execute... Execute 1 jobs...
[Wed Jul 31 07:35:08 2024] localrule simplify_network: input: resources/test/networks/elec.nc, resources/test/costs_2030.csv, resources/test/regions_onshore.geojson, resources/test/regions_offshore.geojson output: resources/test/networks/elec_s.nc, resources/test/regions_onshore_elec_s.geojson, resources/test/regions_offshore_elec_s.geojson, resources/test/busmap _elec_s.csv log: logs/test/simplify_network/elec_s.log jobid: 4 benchmark: benchmarks/test/simplify_network/elec_s reason: Missing output files: resources/test/busmap_elec_s.csv, resources/test/regions_offshore_elec_s.geojson, resources/test/regions_onshore_elec_s.geojson, resources/test/networks/elec_s.nc; Input files updated by another job: resources/test/networks/elec.nc, resources/test/regions_offshore.geojson, resources/test/cos ts_2030.csv, resources/test/regions_onshore.geojson wildcards: simpl= resources: tmpdir=C:\Users\M074F~1.FRA\AppData\Local\Temp\4, mem_mb=12000, mem_mib=11445
INFO:pypsa.io:Imported network elec.nc has buses, carriers, generators, lines, loads, shapes, transformers INFO:main:Mapping all network lines onto a single 380kV layer ERROR:root:Uncaught exception Traceback (most recent call last): File "C:\Users\M.Frank\Documents\GitHub\pypsa-eur.snakemake\scripts\tmpld3wy5nn.simplify_network.py", line 542, in
n, trafo_map = simplify_network_to_380(n)
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\M.Frank\Documents\GitHub\pypsa-eur.snakemake\scripts\tmpld3wy5nn.simplify_network.py", line 134, in simplify_network_to_380
n.lines["num_parallel"] = n.lines.eval("s_nom / (sqrt(3) v_nom i_nom)")
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\M.Frank.conda\envs\pypsa-eur\Lib\site-packages\pandas\core\frame.py", line 4949, in eval
return _eval(expr, inplace=inplace, *kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\M.Frank.conda\envs\pypsa-eur\Lib\site-packages\pandas\core\computation\eval.py", line 357, in eval
ret = eng_inst.evaluate()
^^^^^^^^^^^^^^^^^^^
File "C:\Users\M.Frank.conda\envs\pypsa-eur\Lib\site-packages\pandas\core\computation\engines.py", line 81, in evaluate
res = self._evaluate()
^^^^^^^^^^^^^^^^
File "C:\Users\M.Frank.conda\envs\pypsa-eur\Lib\site-packages\pandas\core\computation\engines.py", line 121, in _evaluate
return ne.evaluate(s, local_dict=scope)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\M.Frank.conda\envs\pypsa-eur\Lib\site-packages\numexpr\necompiler.py", line 977, in evaluate
raise e
File "C:\Users\M.Frank.conda\envs\pypsa-eur\Lib\site-packages\numexpr\necompiler.py", line 874, in validate
_names_cache[expr_key] = getExprNames(ex, context, sanitize=sanitize)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\M.Frank.conda\envs\pypsa-eur\Lib\site-packages\numexpr\necompiler.py", line 723, in getExprNames
ex = stringToExpression(text, {}, context, sanitize)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\M.Frank.conda\envs\pypsa-eur\Lib\site-packages\numexpr\necompiler.py", line 283, in stringToExpression
raise ValueError(f'Expression {s} has forbidden control characters.')
ValueError: Expression (s_nom) / (((sqrt(np.float64(3.0))) (v_nom)) * (i_nom)) has forbidden control characters.
RuleException:
CalledProcessError in file C:\Users\M.Frank\Documents\GitHub\pypsa-eur\rules/build_electricity.smk, line 494:
Command 'C:/Users/M.Frank/.conda/envs/pypsa-eur/python.exe "C:\Users\M.Frank\Documents\GitHub\pypsa-eur.snakemake\scripts\tmpld3wy5nn.simplify_network.py"' return
ed non-zero exit status 1.
[Wed Jul 31 07:35:34 2024]
Error in rule simplify_network:
jobid: 4
input: resources/test/networks/elec.nc, resources/test/costs_2030.csv, resources/test/regions_onshore.geojson, resources/test/regions_offshore.geojson
output: resources/test/networks/elec_s.nc, resources/test/regions_onshore_elec_s.geojson, resources/test/regions_offshore_elec_s.geojson, resources/test/busmap
_elec_s.csv
log: logs/test/simplify_network/elecs.log (check log file(s) for error details)
conda-env: C:\Users\M.Frank\Documents\GitHub\pypsa-eur.snakemake\conda\c790fd0743ac78fd314cfefc3d4521ad
Shutting down, this might take some time. Exiting because a job execution failed. Look above for error message Complete log: .snakemake\log\2024-07-31T072630.993993.snakemake.log WorkflowError: At least one job did not complete successfully.
Installed packages
affine 2.4.0 pyhd8ed1ab_0 conda-forge amply 0.1.6 pyhd8ed1ab_0 conda-forge appdirs 1.4.4 pyh9f0ad1d_0 conda-forge argparse-dataclass 2.0.0 pyhd8ed1ab_0 conda-forge asttokens 2.4.1 pyhd8ed1ab_0 conda-forge atlite 0.2.13 pyhd8ed1ab_0 conda-forge attrs 23.2.0 pyh71513ae_0 conda-forge aws-c-auth 0.7.22 h8c86ca4_10 conda-forge aws-c-cal 0.7.1 hea5f451_1 conda-forge aws-c-common 0.9.23 h2466b09_0 conda-forge aws-c-compression 0.2.18 hea5f451_7 conda-forge aws-c-event-stream 0.4.2 h4b8288a_15 conda-forge aws-c-http 0.8.2 h269d64e_6 conda-forge aws-c-io 0.14.10 hfca834b_1 conda-forge aws-c-mqtt 0.10.4 h519d897_8 conda-forge aws-c-s3 0.6.0 hb746b11_2 conda-forge aws-c-sdkutils 0.1.16 hea5f451_3 conda-forge aws-checksums 0.1.18 hea5f451_7 conda-forge aws-crt-cpp 0.27.3 h8c89294_2 conda-forge aws-sdk-cpp 1.11.329 he0aa860_9 conda-forge azure-core-cpp 1.12.0 haf5610f_0 conda-forge azure-identity-cpp 1.8.0 h8578521_1 conda-forge azure-storage-blobs-cpp 12.11.0 h39eb5e7_1 conda-forge azure-storage-common-cpp 12.6.0 h8578521_1 conda-forge beautifulsoup4 4.12.3 pyha770c72_0 conda-forge blosc 1.21.6 h85f69ea_0 conda-forge bokeh 3.5.0 pyhd8ed1ab_0 conda-forge bottleneck 1.4.0 py311h0a17f05_1 conda-forge branca 0.7.2 pyhd8ed1ab_0 conda-forge brotli 1.1.0 hcfcfb64_1 conda-forge brotli-bin 1.1.0 hcfcfb64_1 conda-forge brotli-python 1.1.0 py311h12c1d0e_1 conda-forge bzip2 1.0.8 h2466b09_7 conda-forge c-ares 1.32.2 h2466b09_0 conda-forge c-blosc2 2.15.0 hb461149_1 conda-forge ca-certificates 2024.7.4 h56e8100_0 conda-forge cads-api-client 1.1.0 pyhd8ed1ab_0 conda-forge cairo 1.18.0 h91e5215_2 conda-forge cartopy 0.23.0 py311hcf9f919_1 conda-forge cdsapi 0.7.0 pyhd8ed1ab_0 conda-forge certifi 2024.7.4 pyhd8ed1ab_0 conda-forge cffi 1.16.0 py311ha68e1ae_0 conda-forge cfgv 3.3.1 pyhd8ed1ab_0 conda-forge cfitsio 4.4.1 hc2ea260_0 conda-forge cftime 1.6.4 py311h0a17f05_0 conda-forge charset-normalizer 3.3.2 pyhd8ed1ab_0 conda-forge click 8.1.7 win_pyh7428d3b_0 conda-forge click-plugins 1.1.1 py_0 conda-forge cligj 0.7.2 pyhd8ed1ab_1 conda-forge cloudpickle 3.0.0 pyhd8ed1ab_0 conda-forge colorama 0.4.6 pyhd8ed1ab_0 conda-forge conda-inject 1.3.2 pyhd8ed1ab_0 conda-forge configargparse 1.7 pyhd8ed1ab_0 conda-forge connection_pool 0.0.3 pyhd3deb0d_0 conda-forge contourpy 1.2.1 py311h005e61a_0 conda-forge country_converter 1.2 pyhd8ed1ab_0 conda-forge cppad 20240000.5 he0c23c2_0 conda-forge cycler 0.12.1 pyhd8ed1ab_0 conda-forge cytoolz 0.12.3 py311ha68e1ae_0 conda-forge dask 2024.7.0 pyhd8ed1ab_0 conda-forge dask-core 2024.7.0 pyhd8ed1ab_0 conda-forge dask-expr 1.1.7 pyhd8ed1ab_0 conda-forge datrie 0.8.2 py311ha68e1ae_7 conda-forge decorator 5.1.1 pyhd8ed1ab_0 conda-forge deprecation 2.1.0 pyh9f0ad1d_0 conda-forge descartes 1.1.0 py_4 conda-forge distlib 0.3.8 pyhd8ed1ab_0 conda-forge distributed 2024.7.0 pyhd8ed1ab_0 conda-forge docutils 0.21.2 pyhd8ed1ab_0 conda-forge dpath 2.2.0 pyha770c72_0 conda-forge entsoe-py 0.6.8 pyhd8ed1ab_0 conda-forge 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geopandas-base 1.0.1 pyha770c72_0 conda-forge geopy 2.4.1 pyhd8ed1ab_1 conda-forge geos 3.12.2 h5a68840_0 conda-forge geotiff 1.7.3 hd7df778_1 conda-forge getopt-win32 0.1 hcfcfb64_1 conda-forge gitdb 4.0.11 pyhd8ed1ab_0 conda-forge gitpython 3.1.43 pyhd8ed1ab_0 conda-forge glib 2.80.3 h7025463_1 conda-forge glib-tools 2.80.3 h4394cf3_1 conda-forge glpk 5.0 h8ffe710_0 conda-forge graphite2 1.3.13 h63175ca_1003 conda-forge graphviz 11.0.0 h09e431a_0 conda-forge gst-plugins-base 1.24.5 hb0a98b8_0 conda-forge gstreamer 1.24.5 h5006eae_0 conda-forge gts 0.7.6 h6b5321d_4 conda-forge h2 4.1.0 pyhd8ed1ab_0 conda-forge harfbuzz 9.0.0 h81778c3_0 conda-forge hdf4 4.2.15 h5557f11_7 conda-forge hdf5 1.14.3 nompi_h2b43c12_105 conda-forge highspy 1.7.2 pypi_0 pypi hpack 4.0.0 pyh9f0ad1d_0 conda-forge humanfriendly 10.0 py311h1ea47a8_5 conda-forge hyperframe 6.0.1 pyhd8ed1ab_0 conda-forge icu 73.2 h63175ca_0 conda-forge identify 2.6.0 pyhd8ed1ab_0 conda-forge idna 3.7 pyhd8ed1ab_0 conda-forge 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conda-forge m2w64-gmp 6.1.0 2 conda-forge m2w64-libwinpthread-git 5.0.0.4634.697f757 2 conda-forge mapclassify 2.6.1 pyhd8ed1ab_0 conda-forge markupsafe 2.1.5 py311ha68e1ae_0 conda-forge matplotlib 3.9.1 py311h1ea47a8_0 conda-forge matplotlib-base 3.9.1 py311h8f1b1e4_0 conda-forge matplotlib-inline 0.1.7 pyhd8ed1ab_0 conda-forge memory_profiler 0.61.0 pyhd8ed1ab_0 conda-forge metis 5.1.0 h63175ca_1007 conda-forge minizip 4.0.6 hb638d1e_0 conda-forge mkl 2023.2.0 h6a75c08_50497 conda-forge mpfr 4.2.1 h64bf75a_1 conda-forge mpir 3.0.0 he025d50_1002 conda-forge msgpack-python 1.0.8 py311h3257749_0 conda-forge msys2-conda-epoch 20160418 1 conda-forge multiurl 0.3.1 pyhd8ed1ab_0 conda-forge mumps-seq 5.7.2 h7c2359a_0 conda-forge munkres 1.1.4 pyh9f0ad1d_0 conda-forge nbformat 5.10.4 pyhd8ed1ab_0 conda-forge netcdf4 1.7.1 nompi_py311hbdc12eb_101 conda-forge networkx 3.3 pyhd8ed1ab_1 conda-forge nodeenv 1.9.1 pyhd8ed1ab_0 conda-forge numexpr 2.10.0 mkl_py311hc8aec83_0 conda-forge numpy 2.0.0 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16.3 h7f155c9_0 conda-forge powerplantmatching 0.5.15 pyhd8ed1ab_0 conda-forge pre-commit 3.7.1 pyha770c72_0 conda-forge progressbar2 4.4.2 pyhd8ed1ab_0 conda-forge proj 9.4.1 hd9569ee_0 conda-forge prompt-toolkit 3.0.47 pyha770c72_0 conda-forge psutil 6.0.0 py311he736701_0 conda-forge pthread-stubs 0.4 hcd874cb_1001 conda-forge pthreads-win32 2.9.1 hfa6e2cd_3 conda-forge pulp 2.8.0 py311h1ea47a8_0 conda-forge pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge py-cpuinfo 9.0.0 pyhd8ed1ab_0 conda-forge pyarrow 16.1.0 py311h06a5be4_4 conda-forge pyarrow-core 16.1.0 py311hf9a78b3_4_cpu conda-forge pyarrow-hotfix 0.6 pyhd8ed1ab_0 conda-forge pycountry 24.6.1 pyhd8ed1ab_0 conda-forge pycparser 2.22 pyhd8ed1ab_0 conda-forge pygments 2.18.0 pyhd8ed1ab_0 conda-forge pyogrio 0.9.0 py311h2494c99_0 conda-forge pyomo 6.6.1 py311h12c1d0e_0 conda-forge pyparsing 3.1.2 pyhd8ed1ab_0 conda-forge pyproj 3.6.1 py311h93f6e28_7 conda-forge pypsa 0.28.0 pyhd8ed1ab_0 conda-forge pyqt 5.15.9 py311h125bc19_5 conda-forge pyqt5-sip 12.12.2 py311h12c1d0e_5 conda-forge pyreadline3 3.4.1 py311h1ea47a8_3 conda-forge pyscipopt 5.1.1 py311hda3d55a_0 conda-forge pyshp 2.3.1 pyhd8ed1ab_0 conda-forge pysocks 1.7.1 pyh0701188_6 conda-forge pytables 3.9.2 py311h1c470a5_3 conda-forge pytest 8.2.2 pyhd8ed1ab_0 conda-forge python 3.11.9 h631f459_0_cpython conda-forge python-dateutil 2.9.0 pyhd8ed1ab_0 conda-forge python-fastjsonschema 2.20.0 pyhd8ed1ab_0 conda-forge python-tzdata 2024.1 pyhd8ed1ab_0 conda-forge python-utils 3.8.2 pyhd8ed1ab_0 conda-forge python_abi 3.11 4_cp311 conda-forge pytz 2024.1 pyhd8ed1ab_0 conda-forge pywin32 306 py311h12c1d0e_2 conda-forge pyxlsb 1.0.10 pyhd8ed1ab_0 conda-forge pyyaml 6.0.1 py311ha68e1ae_1 conda-forge qhull 2020.2 hc790b64_5 conda-forge qt-main 5.15.8 h06adc49_23 conda-forge rasterio 1.3.10 py311hb019220_4 conda-forge re2 2023.09.01 hd3b24a8_2 conda-forge referencing 0.35.1 pyhd8ed1ab_0 conda-forge requests 2.32.3 pyhd8ed1ab_0 conda-forge requests-oauthlib 1.3.1 pypi_0 pypi reretry 0.11.8 pyhd8ed1ab_0 conda-forge rioxarray 0.16.0 pyhd8ed1ab_0 conda-forge rpds-py 0.19.0 py311h533ab2d_0 conda-forge scikit-learn 1.5.1 py311hdcb8d17_0 conda-forge scip 9.1.0 hb46ef20_0 conda-forge scipy 1.14.0 py311hd4686c6_1 conda-forge seaborn 0.13.2 hd8ed1ab_2 conda-forge seaborn-base 0.13.2 pyhd8ed1ab_2 conda-forge setuptools 71.0.1 pyhd8ed1ab_0 conda-forge setuptools-scm 8.1.0 pyhd8ed1ab_0 conda-forge setuptools_scm 8.1.0 hd8ed1ab_0 conda-forge shapely 2.0.5 py311hf837ac7_0 conda-forge sip 6.7.12 py311h12c1d0e_0 conda-forge six 1.16.0 pyh6c4a22f_0 conda-forge smart_open 7.0.4 pyhd8ed1ab_0 conda-forge smmap 5.0.0 pyhd8ed1ab_0 conda-forge snakemake-executor-plugin-cluster-generic 1.0.9 pypi_0 pypi snakemake-executor-plugin-slurm 0.8.0 pypi_0 pypi snakemake-executor-plugin-slurm-jobstep 0.2.1 pypi_0 pypi snakemake-interface-common 1.17.2 pyhdfd78af_0 bioconda snakemake-interface-executor-plugins 9.2.0 pyhdfd78af_0 bioconda snakemake-interface-report-plugins 1.0.0 pyhdfd78af_0 bioconda snakemake-interface-storage-plugins 3.2.3 pyhdfd78af_0 bioconda snakemake-minimal 8.16.0 pyhdfd78af_0 bioconda snakemake-storage-plugin-http 0.2.3 pypi_0 pypi snappy 1.2.1 h23299a8_0 conda-forge snuggs 1.4.7 py_0 conda-forge sortedcontainers 2.4.0 pyhd8ed1ab_0 conda-forge soupsieve 2.5 pyhd8ed1ab_1 conda-forge spdlog 1.13.0 h64d2f7d_0 conda-forge sqlite 3.46.0 h2466b09_0 conda-forge stack_data 0.6.2 pyhd8ed1ab_0 conda-forge statsmodels 0.14.2 py311h0a17f05_0 conda-forge stopit 1.1.2 py_0 conda-forge symlink-exe-runtime 1.0 hcfcfb64_0 conda-forge tabula-py 2.7.0 py311h1ea47a8_1 conda-forge tabulate 0.9.0 pyhd8ed1ab_1 conda-forge tbb 2021.12.0 hc790b64_3 conda-forge tblib 3.0.0 pyhd8ed1ab_0 conda-forge threadpoolctl 3.5.0 pyhc1e730c_0 conda-forge throttler 1.2.2 pyhd8ed1ab_0 conda-forge tiledb 2.24.2 h297c385_2 conda-forge tk 8.6.13 h5226925_1 conda-forge toml 0.10.2 pyhd8ed1ab_0 conda-forge tomli 2.0.1 pyhd8ed1ab_0 conda-forge toolz 0.12.1 pyhd8ed1ab_0 conda-forge toposort 1.10 pyhd8ed1ab_0 conda-forge tornado 6.4.1 py311he736701_0 conda-forge tqdm 4.66.4 pyhd8ed1ab_0 conda-forge traitlets 5.14.3 pyhd8ed1ab_0 conda-forge tsam 2.3.1 pypi_0 pypi typing-extensions 4.12.2 hd8ed1ab_0 conda-forge typing_extensions 4.12.2 pyha770c72_0 conda-forge tzdata 2024a h0c530f3_0 conda-forge ucrt 10.0.22621.0 h57928b3_0 conda-forge ukkonen 1.0.1 py311h005e61a_4 conda-forge unidecode 1.3.8 pyhd8ed1ab_0 conda-forge uriparser 0.9.8 h5a68840_0 conda-forge urllib3 2.2.2 pyhd8ed1ab_1 conda-forge validators 0.33.0 pyhd8ed1ab_0 conda-forge vc 14.3 h8a93ad2_20 conda-forge vc14_runtime 14.40.33810 ha82c5b3_20 conda-forge virtualenv 20.26.3 pyhd8ed1ab_0 conda-forge vs2015_runtime 14.40.33810 h3bf8584_20 conda-forge wcwidth 0.2.13 pyhd8ed1ab_0 conda-forge wheel 0.43.0 pyhd8ed1ab_1 conda-forge win_inet_pton 1.1.0 pyhd8ed1ab_6 conda-forge wrapt 1.16.0 py311ha68e1ae_0 conda-forge xarray 2024.6.0 pyhd8ed1ab_1 conda-forge xerces-c 3.2.5 he0c23c2_1 conda-forge xlrd 2.0.1 pyhd8ed1ab_3 conda-forge xorg-kbproto 1.0.7 hcd874cb_1002 conda-forge xorg-libice 1.1.1 hcd874cb_0 conda-forge xorg-libsm 1.2.4 hcd874cb_0 conda-forge xorg-libx11 1.8.9 h0076a8d_1 conda-forge xorg-libxau 1.0.11 hcd874cb_0 conda-forge xorg-libxdmcp 1.1.3 hcd874cb_0 conda-forge xorg-libxext 1.3.4 hcd874cb_2 conda-forge xorg-libxpm 3.5.17 hcd874cb_0 conda-forge xorg-libxt 1.3.0 hcd874cb_1 conda-forge xorg-xextproto 7.3.0 hcd874cb_1003 conda-forge xorg-xproto 7.0.31 hcd874cb_1007 conda-forge xyzservices 2024.6.0 pyhd8ed1ab_0 conda-forge xz 5.2.6 h8d14728_0 conda-forge yaml 0.2.5 h8ffe710_2 conda-forge yte 1.5.4 pyha770c72_0 conda-forge zict 3.0.0 pyhd8ed1ab_0 conda-forge zipp 3.19.2 pyhd8ed1ab_0 conda-forge zlib 1.3.1 h2466b09_1 conda-forge zlib-ng 2.2.1 he0c23c2_0 conda-forge zstandard 0.23.0 py311h53056dc_0 conda-forge zstd 1.5.6 h0ea2cb4_0 conda-forge
Thanks for any ideas!