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PyProphet / pyprophet

PyProphet: Semi-supervised learning and scoring of OpenSWATH results.
http://www.openswath.org
BSD 3-Clause "New" or "Revised" License
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Mapping d_scores with p-values #14

Closed petercim closed 6 years ago

petercim commented 6 years ago

Not really an issue, more of a question: I was wondering if there's a way to map d_scores in the [FILE]_with_dscore.csv output to p-values (or q-values)?

grosenberger commented 6 years ago

The most recent version from GitHub (not PyPI) should report p-values, posterior error probabilites (pep) and q-values aside the d-score. You can try to install it directly with this command:

pip install git+https://github.com/PyProphet/pyprophet.git