[FEATURE,FIX] Faster transition-level export and small patches

PyProphet / pyprophet

PyProphet: Semi-supervised learning and scoring of OpenSWATH results.

http://www.openswath.org

BSD 3-Clause "New" or "Revised" License

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Closed grosenberger closed 6 years ago

grosenberger commented 6 years ago

This PR improves the speed of exporting transition-level quantities and provides small patches for peptide and protein FDR.