[FEATURE] Faster subsampling & merging

PyProphet / pyprophet

PyProphet: Semi-supervised learning and scoring of OpenSWATH results.

http://www.openswath.org

BSD 3-Clause "New" or "Revised" License

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[FEATURE] Faster subsampling & merging #37

Closed grosenberger closed 5 years ago

grosenberger commented 5 years ago

This PR separates merging & subsampling into individual steps. Subsampling (in parallel) generates small OSWS files that can be merged more efficiently using a PQP or OSW template.

A few methods have further been adapted to improve compatibility with updated dependencies.