[FIX] Backpropagation of peptide- or protein-only scores.

PyProphet / pyprophet

PyProphet: Semi-supervised learning and scoring of OpenSWATH results.

http://www.openswath.org

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[FIX] Backpropagation of peptide- or protein-only scores. #40

Closed grosenberger closed 5 years ago

grosenberger commented 5 years ago

This PR implements the changes proposed by @bretttully in https://github.com/PyProphet/pyprophet/issues/39.

Only peptide- and protein-level contexts are currently supported by pyprophet backpropagate.

grosenberger commented 5 years ago

No, these are only used in IPF at the moment and are more similar to SCORE_MS1 and SCORE_MS2. SCORE_PEPTIDE and SCORE_PROTEIN are the only levels supported by the experiment-wide and global contexts at the moment.

grosenberger commented 5 years ago

Great, please let me know if the issue is resolved now.