Error message: Missing SCORE_MS2 table

PyProphet / pyprophet

PyProphet: Semi-supervised learning and scoring of OpenSWATH results.

http://www.openswath.org

BSD 3-Clause "New" or "Revised" License

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Error message: Missing SCORE_MS2 table #56

Closed hroest closed 3 years ago

hroest commented 5 years ago

When performing transition level scoring (with IPF) and the SCORE_MS2 table is missing, the error message is not informative. It just throws an error saying that. It would be better to inform the user which command to run first and what the issue is.

grosenberger commented 5 years ago

Good point. I tried to address the issue in https://github.com/PyProphet/pyprophet/pull/57, does that work?