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PyProphet / pyprophet

PyProphet: Semi-supervised learning and scoring of OpenSWATH results.
http://www.openswath.org
BSD 3-Clause "New" or "Revised" License
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Initialise default config class #7

Closed bretttully closed 7 years ago

bretttully commented 7 years ago

Add the following to the constructor of _ConfigHolder in https://github.com/PyProphet/pyprophet/blob/master/pyprophet/config.py

_fix_config_types(self.config)

This will ensure that the CONFIG is ready to be used after construction; currently the delimiters are defaulted to 'tab' and this means running pyprophet from within python (i.e. not on the cmd line) doesn't work.

cosmo-ethz commented 7 years ago

Fixed this. Available at github and as version 0.24.1 on PyPI.

cosmo-ethz commented 7 years ago

please close the issue.

bretttully commented 7 years ago

👍