PyProphet / pyprophet

PyProphet: Semi-supervised learning and scoring of OpenSWATH results.
http://www.openswath.org
BSD 3-Clause "New" or "Revised" License
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ADD: export before scoring with MS1MS2 scores #87

Closed oliveralka closed 1 year ago

oliveralka commented 3 years ago

Based on the question on Gitter about an export method for OpenSWATH OSW files with the appropriate "var_" score columns. I would like to add one to pyprophet, which is able to export merged or non scored data.

@grosenberger I am not entirely happy with the outer if-else statement in the export.py, but could not think of a better implementation - please let me know if you have any other suggestions or comments.