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PySCeS / pysces

The official PySCeS project source code repository.
https://pysces.github.io
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Proposed release 1.1.2 #93

Closed jmrohwer closed 8 months ago

jmrohwer commented 9 months ago

I've fixed some bugs so it is time for a new release. In addition I've been working on getting the build to work on Python 3.12. This was a pain on windows, but all sorted now (numpy/numpy#25000, numpy/numpy#25073, https://github.com/numpy/numpy/pull/25160). It will have to wait for Numpy 2.0.0 though unless the changes are backported. The following can serve as a release announcement (edits welcome).

(The CI files are not at their final versions yet, that will have to wait until the PRs are available in numpy. I'd appreciate a review of the other commits).

PySCeS Version 1.1.2

We are pleased to announce the release of the Python Simulator for Cellular Systems: PySCeS (https://pysces.github.io/) version 1.1.2. This is the second bugfix release in the 1.1 series.

New features

Bug fixes

README: https://github.com/PySCeS/pysces/blob/master/README.md

DOCUMENTATION: https://pyscesdocs.readthedocs.io/en/latest/

jmrohwer commented 9 months ago

FYI, CI build problems have been sorted out: https://github.com/PySCeS/pysces/actions/runs/6930280357

Ultimately the f2py fixes should be backported to numpy 1.26 but until such time the Windows build needs to be run against numpy dev nightly builds.

@bgoli Would be appreciated if you could download the wheel and install in a new virtual environment under Python 3.12 to test :smiley: The tests are passing on CI, so should be good.

bgoli commented 9 months ago

Thanks, looking forward to testing! Aim is to have review done this week.

bgoli commented 9 months ago

I've been a bit delayed with the review, will be done this week.

jmrohwer commented 8 months ago

@bgoli Thanks for the review. :+1: Don't spend too much time on testing builds and installs. I have refactored the build system to use mesonpy for a variety of reasons, which I will explain later. Am almost done, just need to run a couple of final tests. It is in the mesonbuild branch if you want to take a look. Will give you a heads up once I'm done.