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PyWiFeS / pipeline

The Python data reduction pipeline for WiFeS
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Cannot find "stdstar_lookup_table.dat" #34

Closed clidman closed 7 months ago

clidman commented 7 months ago

python3 reduce_data.py 20231111 Traceback (most recent call last): File "/Users/clidman/Official/Students/Internship/Spectra/Data/reduce_data.py", line 12, in from pywifes.data_classifier import classify File "/Users/clidman/opt/anaconda3/envs/PyWiFeS/lib/python3.12/site-packages/pywifes/init.py", line 3, in from . import data_classifier, js_wifes_adr, lacosmic, mpfit, optical_model, pywifes, v06_wifes_adr, wifes_adr, wifes_calib, wifes_ephemeris, wifes_imtrans, wifes_metadata, wifes_wsol, working_updated_wifes_calib File "/Users/clidman/opt/anaconda3/envs/PyWiFeS/lib/python3.12/site-packages/pywifes/data_classifier.py", line 5, in from . import wifes_calib File "/Users/clidman/opt/anaconda3/envs/PyWiFeS/lib/python3.12/site-packages/pywifes/wifes_calib.py", line 18, in f1 = open(stdstar_fn, 'r') ^^^^^^^^^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: '/Users/clidman/opt/anaconda3/envs/PyWiFeS/lib/python3.12/site-packages/pywifes/../../reference_data/stdstar_lookup_table.dat'

timothyfrankdavies commented 7 months ago

Hi Chris, that's a change I didn't communicate very well and should add documentation for.

I mentioned it here: https://github.com/PyWiFeS/pipeline/pull/24

If you install with pip install, the reference_data directory doesn't get installed with it. So you either need to install in editable mode with pip install -e ., or you need to set the environment variable PYWIFES_DIR, e.g. using export PYWIFES_DIR=...pipeline/reference_data/

CMartinezLombilla commented 7 months ago

Thank you for reporting the issue, @clidman. Please, let us know if the pipeline runs smoothly after this amendment. We'll add this info to the README.md file.

CMartinezLombilla commented 7 months ago

The README.md has been updated so should be clear no how to proceed. As I said, please @clidman let us know if the pipeline works for you now. Thank you for reporting!