I performed acetylation of lysine residue using PyTM plugin. There are certain clashes in my structure after modification. How can I fix them as gromacs or other minimization softwares/ web-servers aren't able to handle acetylated residues. Please suggest a way.
I performed acetylation of lysine residue using PyTM plugin. There are certain clashes in my structure after modification. How can I fix them as gromacs or other minimization softwares/ web-servers aren't able to handle acetylated residues. Please suggest a way.