Open pslacerda opened 2 months ago
Here a list of plugins needing refactor.
The ones tagged NeedRefactor are old-style plugins with top-level __init__ function instead of __init_plugin__, they are using a deprecated mechanism.
NeedRefactor
__init__
__init_plugin__
Generated with the script from #146.
ccp4_contact.py:32: SyntaxWarning: invalid escape sequence '\S' conParser = re.compile("(\S*)\s*(\d+)([A-Z])\s*(\w+)") ccp4_ncont.py:34: SyntaxWarning: invalid escape sequence '\s' conParser = re.compile("\s*/(\d+)/([a-zA-Z0-9]*)/\s*(\d+).*?/\s*([a-zA-Z0-9]*).*?:") flatten_obj.py:280: SyntaxWarning: invalid escape sequence '\d' statere = re.compile("^%s_(.*)_(\d+)$" % metaprefix) # matches split object names forster_distance_calculator.py:1: SyntaxWarning: invalid escape sequence '\,' ''' forster_distance_calculator.py:80: SyntaxWarning: invalid escape sequence '\P' print('Part of LaTeX: C:\Program Files (x86)\MiKTeX 2.9\miktex' + "\\" + "bin") frame_slider.py:: NeedRefactor plot_noe.py:59: SyntaxWarning: invalid escape sequence '\s' rgx_assi = re.compile("\s*[asignASIGN]+\s+.*") plot_noe.py:60: SyntaxWarning: invalid escape sequence '\s' rgx_or = re.compile("\s*[orOR]+\s+.*") plot_noe.py:61: SyntaxWarning: invalid escape sequence '\(' rgx_bracket = re.compile("(\(|\))") plot_noe.py:62: SyntaxWarning: invalid escape sequence '\w' rgx_tick = re.compile("(\w)\'") plot_noe.py:71: SyntaxWarning: invalid escape sequence '\g' restraint_block.append(rgx_tick.sub("\g<1>^", rgx_bracket.sub(" ", restraint_line))) plot_noe.py:76: SyntaxWarning: invalid escape sequence '\g' restraint_block.append(rgx_tick.sub("\g<1>^", rgx_bracket.sub(" ", restraint_line))) plot_noe.py:81: SyntaxWarning: invalid escape sequence '\g' restraint_block.append(rgx_tick.sub("\g<1>^", rgx_bracket.sub(" ", restraint_line))) propka.py:1: SyntaxWarning: invalid escape sequence '\m' ''' propka.py:225: SyntaxWarning: invalid escape sequence '\R' assert PDB not in ['NIL'], "You always have to provide PDB path. Example: PDB=.\Results_propka\4ins2011.pdb" propka.py:520: SyntaxWarning: invalid escape sequence '\R' Newdir = os.getcwd() + "\Results_propka\\" transformations.py:33: SyntaxWarning: invalid escape sequence '\*' """Homogeneous Transformation Matrices and Quaternions. transformations.py:886: SyntaxWarning: invalid escape sequence '\*' """Return affine transform matrix to register two point sets. transformations.py:995: SyntaxWarning: invalid escape sequence '\*' """Return matrix to transform given 3D point set into second point set. wfmesh.py:45: SyntaxWarning: invalid escape sequence '\s' dat = re.split("\s+", line) plugins/Caver2_1_2.py:548: SyntaxWarning: invalid escape sequence '\C' commandXYZ = "java %s -jar \"%s\Caver2_1.jar\" \"%s\" %f %f %f %s \"%s\" %d %d %d %s" % (JOPTS, self.pymollocation.getvalue(), input, float(self.xlocvar.get()), float(self.ylocvar.get()), float(self.zlocvar.get()), self.tunnels.getvalue(), outdir, self.varremovewater.get(), 0, self.methodvar.get(), "tun_" + self.whichModelSelect) plugins/Caver2_1_2.py:: NeedRefactor plugins/SuperSymPlugin.py:: NeedRefactor plugins/annocryst.py:: NeedRefactor plugins/apbsplugin.py:1459: SyntaxWarning: invalid escape sequence '\d' """ plugins/apbsplugin.py:1506: SyntaxWarning: invalid escape sequence '\d' unassigned = re.compile('REMARK 5 *(\d+) \w* in').findall(f.read()) # Text contains PQR output string plugins/apbsplugin.py:: NeedRefactor plugins/autodock_plugin.py:: NeedRefactor plugins/bnitools.py:: NeedRefactor plugins/castp.py:: NeedRefactor plugins/colorama.py:: NeedRefactor plugins/contact_map_visualizer.py:: NeedRefactor plugins/dehydron.py:: NeedRefactor plugins/dssp_stride.py:: NeedRefactor plugins/emovie.py:: NeedRefactor plugins/lisica.py:: NeedRefactor plugins/mole.py:: NeedRefactor plugins/msms.py:: NeedRefactor plugins/mtsslDockGui.py:: NeedRefactor plugins/mtsslPlotter.py:: NeedRefactor plugins/mtsslTrilaterate.py:: NeedRefactor plugins/mtsslWizard.py:: NeedRefactor plugins/optimize.py:: NeedRefactor plugins/pyanm.py:: NeedRefactor plugins/pytms.py:: NeedRefactor plugins/rendering_plugin.py:: NeedRefactor plugins/resicolor_plugin.py:: NeedRefactor plugins/show_contacts.py:: NeedRefactor
Here a list of plugins needing refactor.
The ones tagged
NeedRefactor
are old-style plugins with top-level__init__
function instead of__init_plugin__
, they are using a deprecated mechanism.Generated with the script from #146.